View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5926_low_1 (Length: 607)
Name: NF5926_low_1
Description: NF5926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5926_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 46 - 357
Target Start/End: Complemental strand, 13979257 - 13978946
Alignment:
| Q |
46 |
ctgccaaattattagcagaagaagaattggaagttattgaattcacaagccatgttgatttatctaatgagcctggaaactatgtaatattctgggaaat |
145 |
Q |
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| T |
13979257 |
ctgctaaattattagcagaagaggaattggaagttattgaattcacaagccatgttgatttatctaatgagcctggaaactatgtaatattctgggaaat |
13979158 |
T |
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| Q |
146 |
tagtggtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataagtctttcactgatccatcctacagtttttcgcgcaaggccaacact |
245 |
Q |
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| T |
13979157 |
tagtggtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataagtctttcactgatccatcctacagtttttcgcgcaaggccaacact |
13979058 |
T |
|
| Q |
246 |
attggggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcattacttgggattaggaacatctattagtcagtataagacac |
345 |
Q |
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| T |
13979057 |
attggggccttagaactccgagttgttgggaaaggaacattccaaaagattcttgatcattacttgggattaggaacatctattagtcagtataagacag |
13978958 |
T |
|
| Q |
346 |
caagatatttag |
357 |
Q |
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|||||||||||| |
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| T |
13978957 |
caagatatttag |
13978946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 13977059 - 13976992
Alignment:
| Q |
379 |
ttgagtgttttttagatggaacatgggtgtatcattttttaaattgagtgtaattttctatgatcatg |
446 |
Q |
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| T |
13977059 |
ttgagtgttttttagatggaacatgggtgtatcattttttaaattgagtgtaattttctatgatcatg |
13976992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 10263735 - 10263672
Alignment:
| Q |
100 |
ttgatttatctaatgagcctggaaactatgtaatattctgggaaattagtggtgaagcaagtga |
163 |
Q |
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| T |
10263735 |
ttgatttatccaatgacccaggacactatgttatcttctgggaaatcagcggtgaagcaagtga |
10263672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 10241619 - 10241557
Alignment:
| Q |
245 |
tattggggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcatta |
307 |
Q |
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| T |
10241619 |
tattgcggcccttgaactccgacttgttcggaaaggaacattccagaagattcttgaacatta |
10241557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 10241764 - 10241659
Alignment:
| Q |
100 |
ttgatttatctaatgagcctggaaactatgtaatattctgggaaattagtggtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataa |
199 |
Q |
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| T |
10241764 |
ttgatttatccaaagaaccaggacattatgttattttttgggaaatcagtggtgaagcaagtgatgaagtgcttggtgaatgttgtacatgtttggataa |
10241665 |
T |
|
| Q |
200 |
gtcttt |
205 |
Q |
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|||||| |
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| T |
10241664 |
gtcttt |
10241659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 10263577 - 10263528
Alignment:
| Q |
258 |
gaactccgagttgttgggaaaggaacataccaaaagattcttgatcatta |
307 |
Q |
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||||||||| ||||| |||||||||||| ||| ||||||||||| ||||| |
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| T |
10263577 |
gaactccgacttgttcggaaaggaacattccagaagattcttgagcatta |
10263528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 10271749 - 10271681
Alignment:
| Q |
258 |
gaactccgagttgttgggaaaggaacataccaaaagattcttgatcattacttgggattaggaacatct |
326 |
Q |
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| T |
10271749 |
gaactccgacttgttcgaaaaggaacattccagaagattcttgagcattatgttggattaggagcatct |
10271681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 18045045 - 18044704
Alignment:
| Q |
15 |
gagaaagatttactgttagttgtggaagcatctgccaaattattagcagaagaagaattggaagttattgaattcacaagccatgttgatttatctaatg |
114 |
Q |
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||||| ||||||| |||| ||||||||||| | ||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||| | |
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| T |
18045045 |
gagaaggatttacaattagcagtggaagcatcgtctaaattattagcagaagagaaactggaagtcgttgaattcacaagccatgtcgatttatctaaag |
18044946 |
T |
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| Q |
115 |
agcctggaaactatgtaatattctgggaaattagtggtgaagcaagtgaagaattgttgagta-----aatgttgcaattgtttggataagtctttcact |
209 |
Q |
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|||| || |||||||||||||||||||||| | || |||||||| ||| || |||||| || |||||||||| ||||||||||||||||||| |
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| T |
18044945 |
agcccgggcactatgtaatattctgggaaatcaacggggaagcaagcgaacaagtgttgattatattgaatgttgcaactgtttggataagtctttcatc |
18044846 |
T |
|
| Q |
210 |
gatccatcctacagtttttcgcgcaaggccaacactattggggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcattact |
309 |
Q |
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| T |
18044845 |
gatgcaggatacactagttctcgtaaattcaacactatcggggccttagaactccgagttgttaggaaaggaacatttcaaaagattcttgatcattact |
18044746 |
T |
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| Q |
310 |
tgggattaggaacatctattagtcagtataagacaccaagat |
351 |
Q |
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| T |
18044745 |
tgggattaggaacatctgttagtcagtataacacaccaagat |
18044704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 48369592 - 48369932
Alignment:
| Q |
11 |
cacagagaaagatttactgttagttgtggaagcatctgccaaattattagcagaagaagaattggaagttattgaattcacaagccatgttgatttatct |
110 |
Q |
| |
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||||||||||||||||| ||||| ||||||||| | || |||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
48369592 |
cacagagaaagatttacagttagccgtggaagcagcggcaaaattattagtagaagagaaattggaagttgttgagttcacaagccatgttgatttatcc |
48369691 |
T |
|
| Q |
111 |
aatgagcctggaaactatgtaatattctgggaaattagtggtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataagtctttcactg |
210 |
Q |
| |
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|| ||||| || ||||||||||| ||||||||||| | || ||||||||||||||| || | | |||||||||| |||||||| |||||||| | |
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| T |
48369692 |
aaagagccagggaactatgtaatcttctgggaaatcaacggggaagcaagtgaagaagtgcttcatgaatgttgcaactgtttggacaagtcttttgtcg |
48369791 |
T |
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| Q |
211 |
atccatcctacagtttttcgcgcaaggccaacactattggggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcattactt |
310 |
Q |
| |
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| T |
48369792 |
atgcaggctacactagttctcgtaaagtcaacgctattggagccttagaacttcgagttgttaggaaaggaacatttcaaaagattcttgatcattacct |
48369891 |
T |
|
| Q |
311 |
gggattaggaacatctattagtcagtataagacaccaagat |
351 |
Q |
| |
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|||||||||||| || ||||||||||||| |||||||||| |
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|
| T |
48369892 |
tggattaggaacagctgttagtcagtataaaacaccaagat |
48369932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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