View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5926_low_2 (Length: 525)

Name: NF5926_low_2
Description: NF5926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5926_low_2
NF5926_low_2
[»] chr6 (5 HSPs)
chr6 (12-509)||(1499359-1499855)
chr6 (419-507)||(25195462-25195550)
chr6 (417-507)||(6896030-6896120)
chr6 (411-484)||(5724751-5724824)
chr6 (463-507)||(6654188-6654232)
[»] chr2 (2 HSPs)
chr2 (416-508)||(33047649-33047741)
chr2 (444-509)||(15928530-15928595)
[»] chr3 (2 HSPs)
chr3 (416-490)||(38022333-38022407)
chr3 (416-507)||(48410910-48411001)
[»] chr4 (6 HSPs)
chr4 (416-507)||(2635059-2635150)
chr4 (412-507)||(21691318-21691413)
chr4 (442-507)||(35064985-35065050)
chr4 (416-484)||(2326932-2327000)
chr4 (416-507)||(33456270-33456361)
chr4 (459-507)||(42152979-42153027)
[»] chr1 (3 HSPs)
chr1 (441-507)||(47892486-47892552)
chr1 (445-507)||(2099784-2099846)
chr1 (465-507)||(37523008-37523050)
[»] scaffold0168 (1 HSPs)
scaffold0168 (411-507)||(31717-31813)
[»] chr5 (4 HSPs)
chr5 (427-509)||(11647989-11648071)
chr5 (441-507)||(25548439-25548505)
chr5 (416-472)||(38845644-38845700)
chr5 (416-484)||(39097160-39097228)
[»] chr8 (2 HSPs)
chr8 (461-507)||(12742227-12742273)
chr8 (443-507)||(35525335-35525399)
[»] chr7 (1 HSPs)
chr7 (440-509)||(22195784-22195853)
[»] scaffold0314 (1 HSPs)
scaffold0314 (416-484)||(17322-17390)


Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Original strand, 1499359 - 1499855
Alignment:
Q  12 acagagttcgaccaattgttatttcgtgttattttgagcacgaaatgctaaccttatcaaatgatacgactattgatcatagagttcggccaattgtgcc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1499359 acagagttcgaccaattgttatttcgtgttattttgagcacgaaatgctaaccttatcaaatgatacgactattgatcatagagttcggcca-ttgtgcc 1499457  T
Q  112 tatatatctcacagcagagtgactgttatacttttctagtatgtagtgatttatggttacaaagtacaaaactttcttgaaatactacgatccagtttac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1499458 tatatatctcacagcagagtgactgttatacttttctagtatgtagtgatttatggttacaaagtacaaaactttcttgaaatactacgatccagtttac 1499557  T
Q  212 aactgaaccgttccacagggtttcaatctgcacccctaaccctccaaattgatacccaactaaggaacgaactcattattagcgaatatcaaccataatc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1499558 aactgaaccgttccacagggtttcaatctgcacccctaaccctccaaattgatacccaactaaggaacggactcattattagcgaatatcaaccataatc 1499657  T
Q  312 aacagggtggcagctaaataattcattcattgataaccttaatccgacaactatatggttacaaagatagaattttgtgcatgaatgaaatcaacctcat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1499658 aacagggtggcagctaaataattcattcattgataaccttaatccgacaactatacggttacaaagatagaattttgtgcatgaatgaaatcaacctcat 1499757  T
Q  412 gtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 509  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1499758 gtgtatgtttggtttcacttctattgggaccaaaattaattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 1499855  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 507
Target Start/End: Complemental strand, 25195550 - 25195462
Alignment:
Q  419 tttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    ||||||| ||||||||  || ||||||||||||| || | ||||| |||||||| || |||||||| ||||| | ||||| ||||||||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgatt 25195462  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 507
Target Start/End: Complemental strand, 6896120 - 6896030
Alignment:
Q  417 tgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    ||||||||| ||||||||  | ||| |||| ||||| || |  |||||||||||||||| |||||||| ||| ||| ||||| ||||||||    
T  6896120 tgtttggttccacttctaaagtgacaaaaaatgattctggagatgtagaattgattatgacatgtttggttgttgtcgagtacaattgatt 6896030  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 5724824 - 5724751
Alignment:
Q  411 tgtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 484  Q
    |||| |||||||||| ||||||||  ||| |||||||| ||| |  |||||||||||||||| || ||||||||    
T  5724824 tgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttg 5724751  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 507
Target Start/End: Complemental strand, 6654232 - 6654188
Alignment:
Q  463 agaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    ||||||||||||| |||||||| ||||| | ||||||||||||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatt 6654188  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 416 - 508
Target Start/End: Complemental strand, 33047741 - 33047649
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatta 508  Q
    |||||||||||| ||||||  |||||||||||||||| || | |||||||||||||| |  |||||||||||||||  |||||||||||||||    
T  33047741 atgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattgatta 33047649  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 509
Target Start/End: Complemental strand, 15928595 - 15928530
Alignment:
Q  444 aaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 509  Q
    ||||||||| || | |||||||||||||| || |||||||| ||| ||| ||||||||||||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgattat 15928530  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 490
Target Start/End: Original strand, 38022333 - 38022407
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgct 490  Q
    |||||||||||||||||||   |||||||| |||||| |  |||||||||||||||| |||||||||||||||||    
T  38022333 atgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgattgct 38022407  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 507
Target Start/End: Complemental strand, 48411001 - 48410910
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||| ||||| ||  |||  || |||||||| | ||||||| ||||||||| ||  ||||||||||||| | ||||||||||||||    
T  48411001 atgtttggttacacttttagaggggtcagaattgattctataagtgtggaattgattctgagatgtttgattgctttcgagtagaattgatt 48410910  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 507
Target Start/End: Original strand, 2635059 - 2635150
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||||||||| ||  |||||||||||||||| |  ||||||| |||||||| || |||||||||||||| |  ||||||| |||||    
T  2635059 atgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgatt 2635150  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 507
Target Start/End: Complemental strand, 21691413 - 21691318
Alignment:
Q  412 gtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||||||| ||||||||  ||||||| |||||||| || | |||||||||||||| || ||| |||| ||| ||| |||||| |||||||    
T  21691413 gtgcatgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgatt 21691318  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 35064985 - 35065050
Alignment:
Q  442 caaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||||||| | ||||||||||||||||| ||| |||| ||||| | ||||||||||||||    
T  35064985 caaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgatt 35065050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 484
Target Start/End: Complemental strand, 2327000 - 2326932
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 484  Q
    |||||||||||||||| || |||||||| |||| |||||| | || |||||||||||||| ||||||||    
T  2327000 atgtttggtttcacttttagtgggaccataattaattatggaggtatagaattgattatgacatgtttg 2326932  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 507
Target Start/End: Original strand, 33456270 - 33456361
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||| ||||||||  ||||| | |||||||| || | ||||||||||||||||| ||| |||  ||| ||| || |||||||||||    
T  33456270 atgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatgacatattttgttggtgtcgactagaattgatt 33456361  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 507
Target Start/End: Complemental strand, 42153027 - 42152979
Alignment:
Q  459 gtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||| ||| || |||||||||||||| | ||||||||||||||    
T  42153027 gtgtagaatttattttgacatgtttgattgctcttgagtagaattgatt 42152979  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 47892552 - 47892486
Alignment:
Q  441 ccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    ||||||||||||||| ||||||||||||||||  | |||||||| ||||| | ||||||||||||||    
T  47892552 ccaaaattgattatggaagtgtagaattgattccgtcatgtttggttgcttttgagtagaattgatt 47892486  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 2099846 - 2099784
Alignment:
Q  445 aattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||| || | ||||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  2099846 aattgattctggaggtgtagaattgattatgacttgtttgattgatgtcgagtagaattgatt 2099784  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 507
Target Start/End: Complemental strand, 37523050 - 37523008
Alignment:
Q  465 aattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    ||||||||||| |||||||||||||| | ||||||||||||||    
T  37523050 aattgattatgacatgtttgattgctctggagtagaattgatt 37523008  T

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Target: scaffold0168 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 507
Target Start/End: Original strand, 31717 - 31813
Alignment:
Q  411 tgtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||| |||||||||| ||||||||  | |||||||||||||| |  | |||||||||||||| || |||||||| ||| ||| ||||| ||||||||    
T  31717 tgtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgatt 31813  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 509
Target Start/End: Original strand, 11647989 - 11648071
Alignment:
Q  427 cacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 509  Q
    ||||||||  ||||||| |||||||| ||   ||||| |||||||| || |||||||||||||||| |||||||||| |||||    
T  11647989 cacttctagagggaccataattgattttggtggtgtataattgattttgacatgtttgattgctgtcgagtagaatttattat 11648071  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 507
Target Start/End: Original strand, 25548439 - 25548505
Alignment:
Q  441 ccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||||| || | ||||||||||||||||| |||||||||||||| |  |||| ||||||||    
T  25548439 ccaaaattgattgtggatgtgtagaattgattatgacatgtttgattgcttttaagtaaaattgatt 25548505  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 38845700 - 38845644
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgatt 472  Q
    |||||||||| ||||||||  | |||||||||||||| || | ||||||||||||||    
T  38845700 atgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 39097160 - 39097228
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 484  Q
    |||||||||||||||| ||  | |||| |||||||||||  | |||||||||||||| || ||||||||    
T  39097160 atgtttggtttcacttttagagagaccgaaattgattatagaggtgtagaattgattttgacatgtttg 39097228  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 507
Target Start/End: Original strand, 12742227 - 12742273
Alignment:
Q  461 gtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||||||||| ||||||| ||||| | ||||||||||||||    
T  12742227 gtagaattgattatggtatgtttggttgctttcgagtagaattgatt 12742273  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 35525335 - 35525399
Alignment:
Q  443 aaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 507  Q
    |||||||||| || | ||||||| || ||| || |||||||||||| ||| ||||||||||||||    
T  35525335 aaaattgattctgaatgtgtagatttaattctgacatgtttgattgttgtcgagtagaattgatt 35525399  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 22195784 - 22195853
Alignment:
Q  440 accaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 509  Q
    ||||||||||||| |  | ||||| |||| |||||| |||||||||||  ||| ||||||||||||||||    
T  22195784 accaaaattgattctagaggtgtaaaattaattatgacatgtttgattattgtcgagtagaattgattat 22195853  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 17322 - 17390
Alignment:
Q  416 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 484  Q
    |||||||||| ||||||||  |  ||||||||||||| || | ||||||||||||||||| ||| ||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgattatgacatatttg 17390  T

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