View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5927-Insertion-1 (Length: 139)
Name: NF5927-Insertion-1
Description: NF5927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5927-Insertion-1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 4e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 37697489 - 37697358
Alignment:
| Q |
8 |
accaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcctctctccctaag |
107 |
Q |
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| T |
37697489 |
accaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcctcgctccctaag |
37697390 |
T |
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| Q |
108 |
cttgaaataatctctttagacggcaaccaact |
139 |
Q |
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| T |
37697389 |
cttgaaataatctctttagacggcaaccaact |
37697358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 38013597 - 38013728
Alignment:
| Q |
8 |
accaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcctctctccctaag |
107 |
Q |
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| T |
38013597 |
accaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaactaactggtcccctccccactacactctcctctctccctaac |
38013696 |
T |
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| Q |
108 |
cttgaaataatctctttagacggcaaccaact |
139 |
Q |
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| T |
38013697 |
cttacagaaatcactttggacggcaaccaact |
38013728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 37994067 - 37994149
Alignment:
| Q |
12 |
aacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctc |
94 |
Q |
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| T |
37994067 |
aacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactcactggtcccctccccgcatcactctc |
37994149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 37989930 - 37989965
Alignment:
| Q |
59 |
caacaaactcactggtcccctccctgcttcactctc |
94 |
Q |
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| T |
37989930 |
caacaaactcaccggtcccctccccgcttcactctc |
37989965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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