View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5927_low_1 (Length: 1058)
Name: NF5927_low_1
Description: NF5927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5927_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 973; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 973; E-Value: 0
Query Start/End: Original strand, 19 - 1051
Target Start/End: Original strand, 3701675 - 3702707
Alignment:
| Q |
19 |
gctacttcaacaaataacagaaaaagacgtagaaaaaatgatgttaacagtggtatatctaatggtggtggttcacagagaaggctatgggtgaaggatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701675 |
gctacttcaacaaataacagaaaaagacatagaaaaaatgatgttaacagtggtatatctaatggtggtggttcacagagaaggctatgggtgaaggatc |
3701774 |
T |
|
| Q |
119 |
gttcaggagcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttagaatgggaaaatcaacttttgatttgatttg |
218 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3701775 |
gttccggggcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttagaatgggaaaatcaacttttgattttatttg |
3701874 |
T |
|
| Q |
219 |
tgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagactagcaaca |
318 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3701875 |
tgaaaaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagattagcaaca |
3701974 |
T |
|
| Q |
319 |
ggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaactgttctta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701975 |
ggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaactgttctta |
3702074 |
T |
|
| Q |
419 |
tgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgagtttgagggtatgtcaggtattccaaatgttgtagggtccatgta |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702075 |
tgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaagaatgagtttgagggtatgtcaggtattccaaatgttgtagggtccatgta |
3702174 |
T |
|
| Q |
519 |
tacatcacatgttccaattatagctcctaagattagtgttgctgattattttaacaagagacatactgagaggaatcaaaagacttcatattcaataact |
618 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702175 |
tacatcacatgttccaatcatagctcctaagattagtgttgctgattattttaacagaagacatactgagaggaatcaaaagacttcatattcaataact |
3702274 |
T |
|
| Q |
619 |
gttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatcagcacttt |
718 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702275 |
gttcaaggtgttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatcagcacttt |
3702374 |
T |
|
| Q |
719 |
ttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttatactcaaca |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702375 |
ttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttatactcaaca |
3702474 |
T |
|
| Q |
819 |
aaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtggtcttgt |
918 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702475 |
aaatcttacttggacacaacatggtttcaatgaaaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtggtcttgt |
3702574 |
T |
|
| Q |
919 |
ttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcgagaaaatgg |
1018 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3702575 |
ttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggtgagaaaatgg |
3702674 |
T |
|
| Q |
1019 |
atcctgaacttatggttgatattgttgatgatg |
1051 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3702675 |
atcctgaacttatggttgatattgttgatgatg |
3702707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 929; E-Value: 0
Query Start/End: Original strand, 55 - 1051
Target Start/End: Original strand, 3698023 - 3699019
Alignment:
| Q |
55 |
aatgatgttaacagtggtatatctaatggtggtggttcacagagaaggctatgggtgaaggatcgttcaggagcatggtgggatgaatgtaataaagaag |
154 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3698023 |
aatgatgttaacagtggtaaatctaatggtggtggttcacagagaaggctttgggtgaaggatcgttcaggagcatggtgggatgaatgtaacaaagaag |
3698122 |
T |
|
| Q |
155 |
attttcctgaagatgagtttaagaaagcttttagaatgggaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3698123 |
attttcctgaagatgagtttaagaaagcatttagaatgggaaaatcaacttttgatttgatttgtgaagaattgaattcagcaattgtgaaagaagatac |
3698222 |
T |
|
| Q |
255 |
aactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggt |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3698223 |
aactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagattagcaacaggtgatcctcttagaattgtttcaaaaaggtttggt |
3698322 |
T |
|
| Q |
355 |
ttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698323 |
ttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctt |
3698422 |
T |
|
| Q |
455 |
tgagaaaaactaaaaatgagtttgagggtatgtcaggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattag |
554 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698423 |
tgagaaaaattaaaaatgagtttgagggtatgtcaggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattag |
3698522 |
T |
|
| Q |
555 |
tgttgctgattattttaacaagagacatactgagaggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcact |
654 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698523 |
tgttgctgcttattttaacaagagacatactgagaggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcact |
3698622 |
T |
|
| Q |
655 |
gatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttctcagaggtg |
754 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
3698623 |
gatgtttgcattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttcttaaaggtg |
3698722 |
T |
|
| Q |
755 |
tttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaa |
854 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698723 |
tttggattgttggaagttcagggtatcctttaatggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaa |
3698822 |
T |
|
| Q |
855 |
gattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttg |
954 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3698823 |
gattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttg |
3698922 |
T |
|
| Q |
955 |
cctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatg |
1051 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698923 |
cctgttgtacttggtgcttgttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatg |
3699019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 3697615 - 3697655
Alignment:
| Q |
19 |
gctacttcaacaaataacagaaaaagacgtagaaaaaatga |
59 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3697615 |
gctacttcaacaaatatcagaaaaagacgtagaaaaaatga |
3697655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 787 - 1001
Target Start/End: Original strand, 17602680 - 17602894
Alignment:
| Q |
787 |
atggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatg |
886 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||| || |||||||||||||| || ||||||| |||||||| || | ||| ||| |||||||| |
|
|
| T |
17602680 |
atggattgggttttagtgccatataagcaccaaaatctgacgtggacacaacatggatttaatgagagaattggtgaaattgagaaaattggtaaagatg |
17602779 |
T |
|
| Q |
887 |
catttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgca |
986 |
Q |
| |
|
| ||| ||| ||||||||||||||| |||||| |||||||||||||| | ||| | |||||||| ||||||| ||| ||||||||||||| | || |
|
|
| T |
17602780 |
cttttagtaggttgaaaggtaggtgggggtgtttgaagaaaaggactgaaattaagttgcaagatttacctgttgttcttggtgcttgttgtgtgcttca |
17602879 |
T |
|
| Q |
987 |
taacatttgtgagat |
1001 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
17602880 |
taatatttgtgagat |
17602894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 607 - 685
Target Start/End: Original strand, 17602503 - 17602581
Alignment:
| Q |
607 |
tattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgc |
685 |
Q |
| |
|
|||||| ||||||||||||| || || ||| || |||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
17602503 |
tattcagtaactgttcaaggtgtggtaaatagtaaaggtgtttttactgatgtgtgtataggttggcctggctcaatgc |
17602581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 899 - 1003
Target Start/End: Complemental strand, 52250869 - 52250765
Alignment:
| Q |
899 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
998 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
52250869 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
52250770 |
T |
|
| Q |
999 |
gatga |
1003 |
Q |
| |
|
|||| |
|
|
| T |
52250769 |
aatga |
52250765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 875 - 1003
Target Start/End: Complemental strand, 52262535 - 52262407
Alignment:
| Q |
875 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
973 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||| |||||||| || ||||| || ||||| || | ||||||||| || || | ||||| |
|
|
| T |
52262535 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaa-gattttaggtgctt |
52262437 |
T |
|
| Q |
974 |
gttgtgttttgcataacatttgtgagatga |
1003 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
52262436 |
gttgtgttttgcataatatttgtgagatga |
52262407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 52251470 - 52251370
Alignment:
| Q |
295 |
gtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagttt |
394 |
Q |
| |
|
|||||| | |||||||| || || ||||||||||| || | |||||||| ||||| ||||| |||||||| || |||||||| || |||||||| |||| |
|
|
| T |
52251470 |
gtttgtatctggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagctggttcttgaggttt |
52251371 |
T |
|
| Q |
395 |
g |
395 |
Q |
| |
|
| |
|
|
| T |
52251370 |
g |
52251370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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