View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5928-Insertion-1 (Length: 805)
Name: NF5928-Insertion-1
Description: NF5928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5928-Insertion-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 721; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 9 - 805
Target Start/End: Complemental strand, 280405 - 279593
Alignment:
| Q |
9 |
tccataactagcaaattggatttctgacatagtttttccctcagggcatttcaattctagggttttttcataatctgcagttgcacatatagaaccaatg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
280405 |
tccataactagcaaattggatttctgacatagtttttccctcagggcatttcaattctagggttttttcataatctgcagttgcacata--gaaccaatg |
280308 |
T |
|
| Q |
109 |
gtaattgtttggatagacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggca |
208 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
280307 |
gtaattgtttggacagacgcattgaaaggggttgcatcaaaacccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaatgaccttggca |
280208 |
T |
|
| Q |
209 |
catggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgcatcctttattttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
280207 |
catggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgcatcctttattttc |
280108 |
T |
|
| Q |
309 |
agcaagcattgcaggccaataccttccaatactttgaccattaacccatgcttctcctttctgaaggcctatcaagtccaagactacggggtttgtacca |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
280107 |
agcaagcattgcaggccaataccttccaatactttgaccattaacccatgcttctcctttctgaaggcctatcaagtccaagactacggggtttgtacca |
280008 |
T |
|
| Q |
409 |
tcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcataga |
508 |
Q |
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| T |
280007 |
tcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcataga |
279908 |
T |
|
| Q |
509 |
actttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagg |
608 |
Q |
| |
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| T |
279907 |
actttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagg |
279808 |
T |
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| Q |
609 |
acccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtaccttgattt |
708 |
Q |
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| T |
279807 |
acccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgacctactgtaacacttaataaacttataatattggtaccttgattt |
279708 |
T |
|
| Q |
709 |
aaagagatgttcccttcatgtataaa------------------accatgttgtgtacccgtaaaaaatccattaataaataaataaagaatatgacctg |
790 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
279707 |
aaagagatgttcccttcatgtataaaaccaggttgactaacggtaccatgttgtgtacccgtcaaaaatccattaataaataaataaagaatatgacctg |
279608 |
T |
|
| Q |
791 |
ttgtattcacttgca |
805 |
Q |
| |
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||||||||||||||| |
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| T |
279607 |
ttgtattcacttgca |
279593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 324 - 713
Target Start/End: Complemental strand, 290537 - 290148
Alignment:
| Q |
324 |
ccaataccttccaatactttgaccattaacccatgcttctcctttctgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaa |
423 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||| |||| | ||||| |||||||| |||| |||||| |||||| ||| ||||||||||||||| |
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| T |
290537 |
ccaataccttccgatactttgaccgttaacccatgcttttcctctttgaagacctatcaaatccaggactacaaggtttgaaccttcaggggtcttgaaa |
290438 |
T |
|
| Q |
424 |
gtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcatac |
523 |
Q |
| |
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| T |
290437 |
gtggtcttgtaccaagtcattggtccttctatagaaacattacgtgtttgccatggaactacattggtagatttgggatcatagaactttctagccacac |
290338 |
T |
|
| Q |
524 |
catttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgcc |
623 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||| |||||||| || |
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| T |
290337 |
cattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaatgagtttcgcaggaccgccaacaatacc |
290238 |
T |
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| Q |
624 |
agtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtaccttgatttaaaga |
713 |
Q |
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| T |
290237 |
agtttctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcaccttgtttcaaaga |
290148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 290657 - 290571
Alignment:
| Q |
123 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
209 |
Q |
| |
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|||| ||||||||||| | |||| | ||||| || |||||||| ||||||||||||||||| |||||||||||| ||||||||| |
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| T |
290657 |
agacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcac |
290571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 327 - 702
Target Start/End: Complemental strand, 24532258 - 24531886
Alignment:
| Q |
327 |
ataccttccaatactttgaccattaacccatgcttctcctttctgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagta |
426 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |||| | |||||||||||||| |||| |||||| |||||| || ||||||||||||||||| |
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| T |
24532258 |
ataccttccaatacattgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgacccttcaggggtcttgaaagtg |
24532159 |
T |
|
| Q |
427 |
gtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccat |
526 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| || | ||||| |||||||| | | ||||||||||||||||||| ||| |||||||| |
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| T |
24532158 |
gtcttgtaccaagtcattggtactcctatagaaacattacgtggtatccatggaactccattaga---tttgggatcatagaactttctagccataccat |
24532062 |
T |
|
| Q |
527 |
ttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagt |
626 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| ||||||||||||| ||||| |
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| T |
24532061 |
tcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttaacatgacccccaacaataccagt |
24531962 |
T |
|
| Q |
627 |
ttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
702 |
Q |
| |
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||||| |||||||| |||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
24531961 |
ttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24531886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 327 - 702
Target Start/End: Complemental strand, 24525586 - 24525213
Alignment:
| Q |
327 |
ataccttccaatactttgaccattaacccatgcttctcctttctgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagta |
426 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |||| |||||| |||||| || | ||||||||||||||| |
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| T |
24525586 |
ataccttccaatactttgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgaccctttaggggtcttgaaagtg |
24525487 |
T |
|
| Q |
427 |
gtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccat |
526 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||| || | ||||| |||||||| | | | ||||||| ||||||||| ||| |||||||| |
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| T |
24525486 |
gtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattaga---tctgggatcttagaactttctagccataccat |
24525390 |
T |
|
| Q |
527 |
ttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagga-cccccaacaatgccag |
625 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| || ||||||||||| |||| |
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| T |
24525389 |
tcatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacatgaccccccaacaataccag |
24525290 |
T |
|
| Q |
626 |
tttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
702 |
Q |
| |
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|||||| |||||||| |||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
24525289 |
tttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24525213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 24525709 - 24525623
Alignment:
| Q |
123 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
209 |
Q |
| |
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|||| ||||||||||| | |||| | ||||| |||||||||||| ||||| ||||||||||| |||| ||||||| ||||||||| |
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| T |
24525709 |
agacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24525623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 24532354 - 24532295
Alignment:
| Q |
150 |
acccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
209 |
Q |
| |
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||||| |||||||||||| ||||| ||||||||||| |||| ||||||| ||||||||| |
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| T |
24532354 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24532295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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