View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5928-Insertion-2 (Length: 546)

Name: NF5928-Insertion-2
Description: NF5928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5928-Insertion-2
NF5928-Insertion-2
[»] chr1 (3 HSPs)
chr1 (147-539)||(42169655-42170048)
chr1 (8-149)||(42169422-42169572)
chr1 (172-229)||(48064182-48064241)
[»] chr7 (1 HSPs)
chr7 (200-229)||(5620261-5620290)
[»] chr4 (2 HSPs)
chr4 (175-229)||(17823012-17823068)
chr4 (200-228)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (201-229)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (200-228)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 147 - 539
Target Start/End: Original strand, 42169655 - 42170048
Alignment:
Q  147 agaaataacttatagataagtgaatatcatgataagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 246  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169655 agaaataacttatagataagtgaatatcatgatgagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 42169754  T
Q  247 ctctaacagaaattacattttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgtgtttaaccagcttgtgcagggtg 346  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169755 ctctaacagaaattacatgttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgtgtttaaccagcttgtgcagggtg 42169854  T
Q  347 gagtttccccgaaagatctttataacacagtctgcaaacaggtccgttttttgttcttttcatgtctatctacatatgtatggtagaaaatgatcttcca 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169855 gagtttccccgaaagatctttataacacagtctgcaaacaggtccgtttttcgttcttttcatgtctatctacatatgtatggtagaaaatgatcttcca 42169954  T
Q  447 ttgtacatcactataaagcattttccttgca-ttttttggaaattgtgaaatgctatgttttgattcttttgaatccttaatgtttttcttgtt 539  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169955 ttgtacgtcactataaagcattttccttgcatttttttggaaattgtgaaatgctatgttttgattcttttgaatccttaatgtttttcttgtt 42170048  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 42169422 - 42169572
Alignment:
Q  8 agctgaaactcaccataggtaataa-taatccatggctacac--------attatttgttggtaattaatactactttccaaatttcatttttgaattca 98  Q
    ||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42169422 agctgaaactcaccataggtaataaataatccatggctacactaactctgattatttgttggtaattaatattactttccaaatttcatttttgaattca 42169521  T
Q  99 cttattcaagcttatctagtgacataagcacttttataaccgtttatgaga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169522 cttattcaagcttatctagtgacataagcacttttataaccgtttatgaga 42169572  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 48064241 - 48064182
Alignment:
Q  172 atcatgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 229  Q
    |||||||||||  |||||||||| ||  || |||||||||||||||||||||| ||||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta 48064182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 5620261 - 5620290
Alignment:
Q  200 taattaagttgtttatccaaacagggccta 229  Q
    ||||||||||||||||||||||||||||||    
T  5620261 taattaagttgtttatccaaacagggccta 5620290  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 17823068 - 17823012
Alignment:
Q  175 atgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 229  Q
    |||||||| ||||||||||||||  || ||||||| |||||||||||||| ||||||    
T  17823068 atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggccta 17823012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 30090160 - 30090132
Alignment:
Q  200 taattaagttgtttatccaaacagggcct 228  Q
    |||||||||||||||||||||||||||||    
T  30090160 taattaagttgtttatccaaacagggcct 30090132  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 14955625 - 14955597
Alignment:
Q  201 aattaagttgtttatccaaacagggccta 229  Q
    |||||||||||||||||||||||||||||    
T  14955625 aattaagttgtttatccaaacagggccta 14955597  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 37308232 - 37308260
Alignment:
Q  200 taattaagttgtttatccaaacagggcct 228  Q
    |||||||||||||||||||||||||||||    
T  37308232 taattaagttgtttatccaaacagggcct 37308260  T

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