View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5928-Insertion-3 (Length: 455)

Name: NF5928-Insertion-3
Description: NF5928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5928-Insertion-3
NF5928-Insertion-3
[»] chr1 (1 HSPs)
chr1 (9-455)||(46080311-46080750)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Original strand, 46080311 - 46080750
Alignment:
Q  9 atatatacgaaaagataagatatgatgatacaacaacagtacttcaaaaataaaatcttgagtcaacaacattgttaaatcattgtacgaaagaaagaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |    
T  46080311 atatatacgaaaagataagatatgatgatacaacaacagtacttcaaaattaaaatcttgagtcaacaacattgttaaatcattgtacgaaagaa----t 46080406  T
Q  109 ttcccacagaccaaacaaagtagttatatcaagaattgtaatctatcaagagttcgtgtttagttcgannnnnnnaagatgccaaccaatattgtttcaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||    
T  46080407 ttcccacagaccaaacaaagtagttatatcaagaattgtaatctattaagagttcgtgtttagttcgatttttttaagatgccaaccaatattgtttcaa 46080506  T
Q  209 ctttcaacattgctactactttaaacagcgaataatcttcttccacgatatcttgtcggcaatgtgtaatatcccaagtcaataatataagtggagaaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  46080507 ctttcaacattgctactactttaaacagcgaataatcttcttccacgatatcttgtcggcaatgtgtaatatcccaagtcaata---taagtggagaaga 46080603  T
Q  309 ataagtagaattaatattgggtatgcatgagagtgatctttaacataatcatgcttattcttgtgctgattataatttataattacatcatgcggctttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||    
T  46080604 ataagtagaattaatattgggtatgcatgagagtgatctttaacataatcatgcttattcttgtggtggttataatttataattacatcacgcggctttt 46080703  T
Q  409 gctaattaagtgaacgattttcttgttaatatgacgagttacatttg 455  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  46080704 gctaattaagtgaacgattttcttgttaacatgacgagttacatttg 46080750  T

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