View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5928-Insertion-4 (Length: 385)
Name: NF5928-Insertion-4
Description: NF5928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5928-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 39683655 - 39684016
Alignment:
| Q |
9 |
atatatataactaactatacatatctgcatatgctctatataaagcaaaagccaaagagaagaatcaatatttgaattagagagaagatatgaaacaaag |
108 |
Q |
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| T |
39683655 |
atatatataacttagtatacatatatgcatatgctctatataaagcaaaagccaaagagaagaatcaatatttgaattagagagaagatatgaaacaaag |
39683754 |
T |
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| Q |
109 |
taacaaagggcatgttccggtgctagtaggcaaaggaggagaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaattgttgaa |
208 |
Q |
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| T |
39683755 |
taacaaagggcatgttccggtgctagtaagcaaaggaggagaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaattgttgaa |
39683854 |
T |
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| Q |
209 |
ttcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgacttcaaagacattcttgctaacatctcct |
308 |
Q |
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| T |
39683855 |
ttcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgactttaaagacattcttgctaacatctcct |
39683954 |
T |
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| Q |
309 |
aatctttcgacaaaaagaaaaagagttggcacctcaccagatgctttgccttggttgagtaa |
370 |
Q |
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| T |
39683955 |
aatctttcgacaaaaagaaaaagagttggcacctcaccagatgctttgccttggttgagtaa |
39684016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 81 - 303
Target Start/End: Original strand, 39689180 - 39689414
Alignment:
| Q |
81 |
tgaattagagagaagatatgaaacaaagtaacaaagggcatgttccggtgctagtaggcaaa------------ggaggagaagatatggagaggatttg |
168 |
Q |
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| T |
39689180 |
tgaatgagataggagagatgaaacaaagtaacaaagggcatgttccagtgctagtaggcaaaaaggaagaagaagaagaagaagatatggagaggatttg |
39689279 |
T |
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| Q |
169 |
ggtgagcatcaaagtgattcatcatccaaaaattgttgaattcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgt |
268 |
Q |
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| T |
39689280 |
ggtgagcatcaaagtgattcaccatcccaaaattgttgaattgttggaacaatctgctaaagaatatggataccaacagggtgtgcttagaatcagacgt |
39689379 |
T |
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| Q |
269 |
gatgttgacgacttcaaagacattcttgctaacat |
303 |
Q |
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| T |
39689380 |
gatattgagatcttcaaagtcattcttgctaacat |
39689414 |
T |
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