View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5928_high_2 (Length: 377)
Name: NF5928_high_2
Description: NF5928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5928_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 280405 - 280050
Alignment:
| Q |
18 |
tccataactagcaaattggatttctgacatagtttttccctcagggcatttcaattctagggttttttcataatctgcagttgcacatatagaaccaatg |
117 |
Q |
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| T |
280405 |
tccataactagcaaattggatttctgacatagtttttccctcagggcatttcaattctagggttttttcataatctgcagttgcacata--gaaccaatg |
280308 |
T |
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| Q |
118 |
gtaattgtttggatagacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggca |
217 |
Q |
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| T |
280307 |
gtaattgtttggacagacgcattgaaaggggttgcatcaaaacccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaatgaccttggca |
280208 |
T |
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| Q |
218 |
catggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgcatcctttattttc |
317 |
Q |
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| T |
280207 |
catggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgcatcctttattttc |
280108 |
T |
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| Q |
318 |
agcaagcattgcaggccaataccttccaatactttgaccattaacctatgctactcct |
375 |
Q |
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| T |
280107 |
agcaagcattgcaggccaataccttccaatactttgaccattaacccatgcttctcct |
280050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 290657 - 290571
Alignment:
| Q |
132 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
218 |
Q |
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| T |
290657 |
agacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcac |
290571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 24525709 - 24525623
Alignment:
| Q |
132 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
218 |
Q |
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|||| ||||||||||| | |||| | ||||| |||||||||||| ||||| ||||||||||| |||| ||||||| ||||||||| |
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| T |
24525709 |
agacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24525623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 24532354 - 24532295
Alignment:
| Q |
159 |
acccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
218 |
Q |
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| T |
24532354 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24532295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 24525586 - 24525553
Alignment:
| Q |
336 |
ataccttccaatactttgaccattaacctatgct |
369 |
Q |
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| T |
24525586 |
ataccttccaatactttgaccattaacccatgct |
24525553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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