View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5928_high_3 (Length: 366)
Name: NF5928_high_3
Description: NF5928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5928_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 279955 - 279584
Alignment:
| Q |
1 |
cattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttga |
100 |
Q |
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| T |
279955 |
cattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttga |
279856 |
T |
|
| Q |
101 |
taaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgca |
200 |
Q |
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| T |
279855 |
taaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgca |
279756 |
T |
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| Q |
201 |
tgaccaactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaa------------------accatgtt |
282 |
Q |
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| T |
279755 |
tgacctactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaaaccaggttgactaacggtaccatgtt |
279656 |
T |
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| Q |
283 |
gtgtacccgtaaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctt |
354 |
Q |
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| T |
279655 |
gtgtacccgtcaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctt |
279584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 290393 - 290148
Alignment:
| Q |
8 |
tgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatcc |
107 |
Q |
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| T |
290393 |
tgtttgccatggaactacattggtagatttgggatcatagaactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatcc |
290294 |
T |
|
| Q |
108 |
aaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaa |
207 |
Q |
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| T |
290293 |
aaaacattgtttggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaa |
290194 |
T |
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| Q |
208 |
ctgtaacacttaataaacttataatattggtaccttgatttaaaga |
253 |
Q |
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| T |
290193 |
gtgtaacacttaacaaacttataatattggcaccttgtttcaaaga |
290148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 24532093 - 24531886
Alignment:
| Q |
35 |
tttgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaa |
134 |
Q |
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||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||||| |
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| T |
24532093 |
tttgggatcatagaactttctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaa |
24531994 |
T |
|
| Q |
135 |
aagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatat |
234 |
Q |
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| T |
24531993 |
atgagtttaacatgacccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatat |
24531894 |
T |
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| Q |
235 |
tggtacct |
242 |
Q |
| |
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|||||||| |
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| T |
24531893 |
tggtacct |
24531886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 24525419 - 24525213
Alignment:
| Q |
37 |
tgggatcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaa |
136 |
Q |
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||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
24525419 |
tgggatcttagaactttctagccataccattcatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaat |
24525320 |
T |
|
| Q |
137 |
gagttttacagga-cccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatatt |
235 |
Q |
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|||||| ||| || ||||||||||| |||||||||| |||||||| |||| ||| |||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
24525319 |
gagtttcacatgaccccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatatt |
24525220 |
T |
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| Q |
236 |
ggtacct |
242 |
Q |
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||||||| |
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| T |
24525219 |
ggtacct |
24525213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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