View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5928_low_1 (Length: 484)
Name: NF5928_low_1
Description: NF5928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5928_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 39684123 - 39683655
Alignment:
| Q |
1 |
ctaattttcaaattcgattagttggaagagacgatctgaaagtgcttcgaataaaataatcttagtatattgaacatagggaaaaccaaagaatnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39684123 |
ctaattttcaaattcgattagttggaagagacgatctgaaagtgcttcgaataaagtaatcttagtatattgaacatagggaaaaccaaagaataaaaat |
39684024 |
T |
|
| Q |
101 |
nnnnnnnttactcaaccaaggcaaagcatctggtgaggtgccaactctttttctttttgtcgaaagattaggagatgttagcaagaatgtctttgaagtc |
200 |
Q |
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| T |
39684023 |
gaaaaaattactcaaccaaggcaaagcatctggtgaggtgccaactctttttctttttgtcgaaagattaggagatgttagcaagaatgtctttaaagtc |
39683924 |
T |
|
| Q |
201 |
gtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaacaatttttggatgatgaatcactttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39683923 |
gtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaacaatttttggatgatgaatcactttg |
39683824 |
T |
|
| Q |
301 |
atgctcacccaaatcctctccatatcttctcctcctttgcctactagcaccggaacatgccctttgttactttgtttcatatcttctctctaattcaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39683823 |
atgctcacccaaatcctctccatatcttctcctcctttgcttactagcaccggaacatgccctttgttactttgtttcatatcttctctctaattcaaat |
39683724 |
T |
|
| Q |
401 |
attgattcttctctttggcttttgctttatatagagcatatgcagatatgtatagttagttatatatat |
469 |
Q |
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| T |
39683723 |
attgattcttctctttggcttttgctttatatagagcatatgcatatatgtatactaagttatatatat |
39683655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 175 - 397
Target Start/End: Complemental strand, 39689414 - 39689180
Alignment:
| Q |
175 |
atgttagcaagaatgtctttgaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaa |
274 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
39689414 |
atgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacaccctgttggtatccatattctttagcagattgttccaacaattcaa |
39689315 |
T |
|
| Q |
275 |
caatttttggatgatgaatcactttgatgctcacccaaatcctctccatatcttctcctcc------------tttgcctactagcaccggaacatgccc |
362 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||||||||| |
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| T |
39689314 |
caattttgggatggtgaatcactttgatgctcacccaaatcctctccatatcttcttcttcttcttcttcctttttgcctactagcactggaacatgccc |
39689215 |
T |
|
| Q |
363 |
tttgttactttgtttcatatcttctctctaattca |
397 |
Q |
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|||||||||||||||||| ||| || ||| ||||| |
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| T |
39689214 |
tttgttactttgtttcatctctcctatctcattca |
39689180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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