View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5929-Insertion-1 (Length: 933)

Name: NF5929-Insertion-1
Description: NF5929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5929-Insertion-1
NF5929-Insertion-1
[»] chr8 (5 HSPs)
chr8 (310-928)||(3385708-3386336)
chr8 (9-318)||(3386839-3387147)
chr8 (295-468)||(3367398-3367568)
chr8 (469-515)||(37466468-37466514)
chr8 (721-762)||(3404826-3404867)
[»] chr5 (2 HSPs)
chr5 (9-468)||(15807040-15807490)
chr5 (742-910)||(41804866-41805040)
[»] chr6 (2 HSPs)
chr6 (469-520)||(29734438-29734489)
chr6 (471-520)||(10401950-10401999)
[»] chr4 (6 HSPs)
chr4 (469-520)||(13483181-13483232)
chr4 (469-520)||(49649147-49649198)
chr4 (469-520)||(52353833-52353884)
chr4 (469-515)||(2472892-2472938)
chr4 (472-514)||(20943622-20943664)
chr4 (469-514)||(41534218-41534263)
[»] chr7 (2 HSPs)
chr7 (469-515)||(33316147-33316193)
chr7 (469-514)||(2443342-2443387)
[»] chr3 (2 HSPs)
chr3 (469-515)||(49492033-49492079)
chr3 (471-520)||(45301187-45301236)


Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 310 - 928
Target Start/End: Complemental strand, 3386336 - 3385708
Alignment:
Q  310 tataattaatgagaaagagtataataaaatcagaatataaactgtaaatatgattgcgtgcaccatttgaataaataaatgagatatagttgcttctttt 409  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3386336 tataattaataagatagaatataataaaatcagaatataaactgtaaatatgattgcgtgcaccatttgaataaataa-tgagatatagttgcttctttt 3386238  T
Q  410 tcattacatggtaggagtacagataaccaatatcagtaatggt-----------gtattaccataccatttgaattttacatataagtttacttaaaaga 498  Q
    ||||||||||||||||||||||||||||||||||||||| |||           ||||| ||||| ||||| |||| ||||||||| ||||||||||||     
T  3386237 tcattacatggtaggagtacagataaccaatatcagtaagggttattcaccgttgtattgccatatcatttaaattatacatataaatttacttaaaagg 3386138  T
Q  499 agagactaaaagtgaagttgaannnnnnnngaaggactaaaaatcgaagaaactttttataagaactgaaacaaatagctggtatatttgtagaa-ccac 597  Q
    ||||| |||| |||||||| ||        |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||    
T  3386137 agagattaaatgtgaagtt-aaatttttttgaaggattaaaaatcgaagaaactttttataagaactgaaacaaatagttggtatatttgtaaaaaccac 3386039  T
Q  598 aaacatatttaacaatatattctaactttgagcggtactatatggagtagcccctctattggtgtttggtaatttttgaaattgtatggtttcaatcgac 697  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3386038 atatatatttaacaatatattctaactttgagcggtactatatggagtagcccctctattggtgtttggtaatttttgaaattgtatggtttcaatggac 3385939  T
Q  698 tttcaattttactttagaaacaattatatattttcttggttaaattatcttttagaatatggcccagatacagaattggttcaccatgagagtttaattt 797  Q
    ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||| ||||||| |||||    
T  3385938 ttttaattttactttaaaaacaattatatattttcttggtcaaattatcttttagaatatggccaagatttagaattggttcaccacgagagttaaattt 3385839  T
Q  798 gggtatcgaaggatattggttttgaagttgtaaatttgggaccaaaagaatttgcttgaggggctgaagatcc-aaatctcaatggagtcattcaatgta 896  Q
    ||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |||| || |||||||||| |||||||||||||||| |||||| ||    
T  3385838 gggcatcgaaggatattggttttgaagttgcaaatttaggaccaatagaatttgtttgaaggactgaagatccaaaatctcaatggagtcgttcaattta 3385739  T
Q  897 cttaataaaacatccccttacttatatttatt 928  Q
    |||||||||| || ||||||||||||||||||    
T  3385738 cttaataaaatat-cccttacttatatttatt 3385708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 3387147 - 3386839
Alignment:
Q  9 atatgatatataactatgattaccataattcttctcttggttgtatgtaattgggaatgatagttttctatctcaatattgaagttaaatcggaaacttt 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387147 atatggtatataactatgattaccataattcttctcttggttgtatgtaattgggaatgatagttttctatctcaatattgaagttaaatcggaaacttt 3387048  T
Q  109 atgtattgtggttgtatttttcttcattcatctctgtgagacactaagaagttgtttcaatatgtttatttaggttctccaccagatatatacattgttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3387047 atgtattgtggttgtatttttcttcattcatctctgtgagacactaagaagttgtttcaatatgtttatttaggttctcccccagatatatacattgttt 3386948  T
Q  209 tctattgttttgacttgaaaatgaggagaaagtgaactgtctctaattgattnnnnnnnnctacaggattgatacacttttacaggctttattgaatcta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  3386947 tctattgttttgacttgaaaatgaggagaaagtgaactgtctccaattgatt-aaaaaaactacaggattgatacacttttacaggctttattgaatcta 3386849  T
Q  309 ttataattaa 318  Q
    ||||||||||    
T  3386848 ttataattaa 3386839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 295 - 468
Target Start/End: Original strand, 3367398 - 3367568
Alignment:
Q  295 ctttattgaatctattataattaatgagaaagagtataataaaatcagaatataaactgtaaatatgattgcgtgcaccatttgaataaataaatgagat 394  Q
    |||||||||||||||  |||||||||||| ||| || ||||||||||||||||||||| |||||  || ||||||| |||||||||||||||| ||||||    
T  3367398 ctttattgaatctatcctaattaatgagatagaatagaataaaatcagaatataaactataaat--gagtgcgtgcgccatttgaataaataa-tgagat 3367494  T
Q  395 atagttgcttctttttcattacatggtaggagtacagataaccaatatcagtaatggtgtattaccataccatt 468  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  3367495 agagttgcttctttttcattacatggtaggagtgcagataaccaatatcagtaatgatgtattgccatatcatt 3367568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 37466468 - 37466514
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 515  Q
    |||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  37466468 tgaattttacatatgagtttactttaaaggagagacaaaaagtgaag 37466514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 762
Target Start/End: Complemental strand, 3404867 - 3404826
Alignment:
Q  721 ttatatattttcttggttaaattatcttttagaatatggccc 762  Q
    ||||||||||  ||||| ||||||||||||||||||||||||    
T  3404867 ttatatatttatttggtcaaattatcttttagaatatggccc 3404826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 232; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 9 - 468
Target Start/End: Original strand, 15807040 - 15807490
Alignment:
Q  9 atatgatatataactatgattaccataattcttctcttggttgtat----gtaattgggaatgatagttttctatctcaatattgaagttaaatcggaaa 104  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15807040 atatggtatataactatgattaccatatttcttctctttgttgtatatatgtaattgggaatgatagttttctatctcaatactgaagttaaatcggaaa 15807139  T
Q  105 ctttatgtattgtggttgtatttttcttcattcatctctgtgagacactaagaagttgtttcaatatgtttatttaggttctccaccagatatatacatt 204  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||| |||||||||| ||||    
T  15807140 cattatgtattgtggttgtatttttcttcattcatctctgtgaggcactaagaagttgtttcaatctgtttatttatgttatcccccagatatattcatt 15807239  T
Q  205 gttttctattgttttgacttg-aaaatgaggagaaagtgaactgtctctaattgattnnnnnnnnctacaggattgatacacttttacaggctttattga 303  Q
    |||||||||||||||| |||| ||||||| |||||| |||| |||||| | ||||||        |||||||||||||||||||||| || |||||||||    
T  15807240 gttttctattgttttggcttgaaaaatgaagagaaaatgaattgtctccagttgattaaaaaacactacaggattgatacacttttatagactttattga 15807339  T
Q  304 atctattataattaatgagaaagagtataataaaatcagaatataaactgtaaatatgattgcgtgcaccatttgaataaataaatgagatatagttgct 403  Q
    ||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||              ||||||||| |||| ||||||||||||    
T  15807340 atctatcctaattaatgagatagaatataataaaatcagaatataaactgtaaatatga-------------gtgaataaat-aatgtgatatagttgct 15807425  T
Q  404 tctttttcattacatggtaggagtacagataaccaatatcagtaatggtgtattaccataccatt 468  Q
    |||| ||| ||| ||| |||||| ||||||| |||||||||||||||||||||| ||||| ||||    
T  15807426 tcttgttcgttatatgttaggagcacagatagccaatatcagtaatggtgtattgccataacatt 15807490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 742 - 910
Target Start/End: Complemental strand, 41805040 - 41804866
Alignment:
Q  742 ttatcttttagaatatggcccagatacagaattggttcaccatga-----gagtttaatttgggtatcgaaggatattggttttgaagttgtaaatttgg 836  Q
    ||||||||||||||||| || |||| ||||||| ||||||||  |     ||||| ||| | || ||| |||||| |||||||| |||||| |||||| |    
T  41805040 ttatcttttagaatatgacctagattcagaattagttcaccacaacacaagagttaaatattggcatccaaggatgttggttttcaagttgcaaatttag 41804941  T
Q  837 gaccaaaagaatttgcttgaggggctgaagatcc-aaatctcaatggagtcattcaatgtacttaataaaacatc 910  Q
    |||||  |||||||||||||||| |  |||| || |||| | |||||| ||||||||||||||||||||||||||    
T  41804940 gaccagtagaatttgcttgagggaccaaagaaccaaaatatgaatggactcattcaatgtacttaataaaacatc 41804866  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 29734489 - 29734438
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 520  Q
    |||||| |||||||||||||||||||||  |||||||| |||||||| ||||    
T  29734489 tgaattctacatataagtttacttaaaatgagagactagaagtgaagatgaa 29734438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 10401999 - 10401950
Alignment:
Q  471 aattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 520  Q
    |||| ||||||| ||||||||| ||||||||||| |||||||||| ||||    
T  10401999 aattatacatatgagtttactttaaagaagagaccaaaagtgaagctgaa 10401950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 520
Target Start/End: Original strand, 13483181 - 13483232
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 520  Q
    |||||||||||||| ||||||||| ||||||||||  |||||||||| ||||    
T  13483181 tgaattttacatatgagtttactttaaagaagagatcaaaagtgaagatgaa 13483232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 520
Target Start/End: Original strand, 49649147 - 49649198
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 520  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||||||| ||||    
T  49649147 tgaattatacatatgagtttactttaaagaagagaccaaaagtgaagatgaa 49649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 52353884 - 52353833
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 520  Q
    |||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||    
T  52353884 tgaattctacatatgagtttactttaaagaagagactaaaattgaagatgaa 52353833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 2472892 - 2472938
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 515  Q
    |||||||||||||  |||||||||||||| |||||| ||||||||||    
T  2472892 tgaattttacatactagtttacttaaaaggagagaccaaaagtgaag 2472938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 472 - 514
Target Start/End: Original strand, 20943622 - 20943664
Alignment:
Q  472 attttacatataagtttacttaaaagaagagactaaaagtgaa 514  Q
    ||||||||||||||||||||| |||| || |||||||||||||    
T  20943622 attttacatataagtttactttaaaggagggactaaaagtgaa 20943664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 41534263 - 41534218
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaa 514  Q
    ||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  41534263 tgaattttatatattagtttactttaaagaagagactaaaaatgaa 41534218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 515
Target Start/End: Complemental strand, 33316193 - 33316147
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 515  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  33316193 tgaattttacatatgagtttactttaaagaagtgaccaaaagtgaag 33316147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 2443387 - 2443342
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaa 514  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||||||    
T  2443387 tgaattctacatatgagtttactttaaagaagagaccaaaagtgaa 2443342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 49492033 - 49492079
Alignment:
Q  469 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 515  Q
    |||||| |||| || ||||||||||||||||||||| ||||||||||    
T  49492033 tgaattctacacatgagtttacttaaaagaagagaccaaaagtgaag 49492079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 45301187 - 45301236
Alignment:
Q  471 aattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 520  Q
    ||||||| |||| ||||||||| ||||| |||||||||||||||| ||||    
T  45301187 aattttaaatatgagtttactttaaagatgagactaaaagtgaagatgaa 45301236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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