View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5929-Insertion-2 (Length: 923)
Name: NF5929-Insertion-2
Description: NF5929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5929-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 539
Target Start/End: Original strand, 6453345 - 6453864
Alignment:
| Q |
9 |
cagttggttaagcaacgggttcaacttaggaagtaaggtcaatgttcaatcctcgtagaatacactcttgaacaaggggcaaaaagttttgagttgctac |
108 |
Q |
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| T |
6453345 |
cagttcgttaagcaacgggttcaacttaggaagtaaggtcaatgttcaatcctcgtagaatacactcttgaacaaggggcaaaaagttttgagttgctac |
6453444 |
T |
|
| Q |
109 |
ctaaacacttgggcagatattagcttcataggcagttcaaaagatcgaaattcgtagtgatactttgtaaaaccacgaagtctcaaagttctttgtatat |
208 |
Q |
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|||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
6453445 |
ctaagcacttgggcagatattagcttcatagcctgttcaaaagatcgaaattcgtagtgatactttgtaaaaccaccgagtctcaaagttcttcgtatat |
6453544 |
T |
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| Q |
209 |
gtttgaatttgtggtaaatttgtcaaaatcactttaaatcgtcatgactttgtatttaaactatatttttaaatttactgtgactaaaattataattaca |
308 |
Q |
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| T |
6453545 |
gtttgaatttgtggttaatttgtcaaaatcactttgaatcatcgtgactttgtatttaaactatatttttaaattt-----------caataaaattacg |
6453633 |
T |
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| Q |
309 |
gtgtcacattaattttgtcaaatagagttttaaatgaggagactacacgtaattgcaactattttctatccaaacaatttattttcagatgaaacaaaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6453634 |
gtgtcacattaattttgtcaaatagagttttaaacgaagagactacatgtaattacaactattttctatccaaacaatttattttcagatgaaacaaaaa |
6453733 |
T |
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| Q |
409 |
tatttcttaattaaattgaagaatgaataatataacaaacatttttgagagaatttaaacacacatttaagtcttcataaataatattcctgtatagata |
508 |
Q |
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| T |
6453734 |
tatttcttaattaaattgaagaatgaataatataacaaacatttttgagagaatttgaacacacatttaagtcttcataaataatattcctgtatagata |
6453833 |
T |
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| Q |
509 |
aggtaaaggaacctcagtactccccaggcat |
539 |
Q |
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| T |
6453834 |
aggtaaaggaacctcagtactccccaggcat |
6453864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 571 - 923
Target Start/End: Original strand, 6453906 - 6454259
Alignment:
| Q |
571 |
ctctgtgcaaagaaagatagtactttgatgaccactgctactaatattatctcaggcctcagcttccataaataactagtactacactaccctttttcac |
670 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
6453906 |
ctctgtgcaaagaaagatagtactttgatgaccactgctactaatattatatcaggcctcagcttccataaataactagtactatacttccctttttcac |
6454005 |
T |
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| Q |
671 |
taacttttcgctcaaaccaccatccccnnnnnnnctctgatcttttctctttctcttcatttaatcttttttcctttatnnnnnnntctctatctctgac |
770 |
Q |
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| T |
6454006 |
taacttttcgctcaaaccaccatccccaaaaaaactctgatcttttctctttctcttcatttaatcttttttcctttat-aaaaaatctctatctctgac |
6454104 |
T |
|
| Q |
771 |
taagttactagt-agtctctggaaaaattaattcatctctgtgttatattnnnnnnntgctattctttaaatcaaccctagttggatcctactaaaaggg |
869 |
Q |
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| T |
6454105 |
taagttactagtaagtctctggaaaaattaattcatctctgtgttatattaaaaaaatgcaattctttaaatcaaccctagttggatcctactaaaaggg |
6454204 |
T |
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| Q |
870 |
tacctcg-aaacaatgcaaatcatgactcactcatgatcatataatcactctttt |
923 |
Q |
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| T |
6454205 |
tacctcgaaaacaatgcaaatcatgactcactcatgatcatataatcactctttt |
6454259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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