View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5929_high_2 (Length: 346)
Name: NF5929_high_2
Description: NF5929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5929_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 36 - 345
Target Start/End: Original strand, 660455 - 660780
Alignment:
| Q |
36 |
caacaacctccaatcgcgccgccatgaatagaagcctgcaccacacgtaacatgggggataaacagaactataacaaatcttccaacatatattaatttt |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
660455 |
caacaacctccaatcgcgccgccatgaatagaagcctgcaccacacgtaacatgggggataaacagaactatagcaaatcttccaacatatattaatttt |
660554 |
T |
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| Q |
136 |
gcaaaaatatattcatacttaaattcatgacagataatcaaggtctaaacaagtaaaccattgtaatatg-----------------acgtaaccaagct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
660555 |
gcaaaaatatattcatacttaaattcatgacagataatcaaggtctaaacaagtaaaccattgtaatatgaacttacattcaacaatacgtaaccaagct |
660654 |
T |
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| Q |
219 |
ttcaacataatcctggacattgaaccaccaagattttttgattctctttacgcttttatctctcctattatagagaattgctgaactttcacaactggtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
660655 |
ttcaacataatcctggacattgaaccaccaagattttttgattctctttatgcttttatctctccaattatagagaattgctgaactttcacaactggtt |
660754 |
T |
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| Q |
319 |
ttcaataaatagtgtatcattcttctc |
345 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
660755 |
ttcaat-aatagtgtatcattcttctc |
660780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 22070827 - 22070781
Alignment:
| Q |
137 |
caaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
183 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
22070827 |
caaaaatatattcatacttaaatttaggacagataatcaagctctaa |
22070781 |
T |
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