View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5929_low_1 (Length: 467)
Name: NF5929_low_1
Description: NF5929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5929_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 22 - 457
Target Start/End: Complemental strand, 16225131 - 16224688
Alignment:
| Q |
22 |
tacaacaaccaataactagtttaaagtgttcaaacaacataattgaaatcactttgttgaaaactaacatgaaccaaatagaaactatcctagcaattat |
121 |
Q |
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| T |
16225131 |
tacaacaaccaataactagtttaaagtgttcaaacaacataattgaaatcactttgttgaaaactaacatgaaccaaatagaaactatcctagcaattat |
16225032 |
T |
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| Q |
122 |
aacttgatcttcacaacagccgcaaagtacagtggttaccaataggcaataagaatagggtttagggattata----gggctcacagaaattcattttca |
217 |
Q |
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| T |
16225031 |
aacttgatcttcacaacagccgcaaagtacagtgggtaccaataggcaataaacatagggtttagggtttatatatagggctcacagaaattccttttca |
16224932 |
T |
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| Q |
218 |
atcttcttatattccaaagtagtagtatcacacaaaataa----acataattgataacctatggagtggaaaaatagaaggtataagattttaaaaacat |
313 |
Q |
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| T |
16224931 |
atcttcttatattccaaagtagtagaatcacacaaaataataatacttaattgataacctatggaggggaaaaatagaaggtttaagattttaaaaacat |
16224832 |
T |
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| Q |
314 |
gttgcaaatataaaattaattcatgttatgcaccggtatttatgactgtgactgcagtttaaacccttgatccttcttgctcaatggcctcggcaccttc |
413 |
Q |
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| T |
16224831 |
gttgcaaatataaaattaattcatgttatgcaccggtatttatgactgtgactgcagtttaaacccttgatccttcttgctcagtggcctcggcaccttc |
16224732 |
T |
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| Q |
414 |
tccctcattctctccacttaactcttccaacgattttccctttg |
457 |
Q |
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| T |
16224731 |
tccctcattctctccacttaactcttccaacgattttccctttg |
16224688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 16185371 - 16185298
Alignment:
| Q |
384 |
tccttcttgctcaatggcctcggcaccttctccctcattctctccacttaactcttccaacgattttccctttg |
457 |
Q |
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| T |
16185371 |
tccttcttgttcagtggcctcggcaccttctccctcgttctctccactcaactcttccaacgattttccctttg |
16185298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 457
Target Start/End: Original strand, 16173956 - 16174064
Alignment:
| Q |
349 |
gtatttatgactgtgactgcagtttaaacccttgatccttcttgctcaatggcctcggcaccttctccctcattctctccacttaactcttccaacgatt |
448 |
Q |
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| T |
16173956 |
gtattcatgactgtgagcacagtttaaacccccgatccttcttgccgagtgtcctcaacactttctccttcattctctccactcaactcttccaatgatt |
16174055 |
T |
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| Q |
449 |
ttccctttg |
457 |
Q |
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| T |
16174056 |
ttccctttg |
16174064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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