View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5929_low_2 (Length: 393)

Name: NF5929_low_2
Description: NF5929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5929_low_2
NF5929_low_2
[»] chr8 (6 HSPs)
chr8 (18-393)||(10026270-10026645)
chr8 (18-393)||(10223899-10224274)
chr8 (364-393)||(4662827-4662856)
chr8 (356-393)||(18355761-18355798)
chr8 (337-393)||(14093024-14093080)
chr8 (357-393)||(32928028-32928064)
[»] chr1 (6 HSPs)
chr1 (18-393)||(3327791-3328166)
chr1 (356-393)||(11817229-11817266)
chr1 (334-393)||(3515943-3516002)
chr1 (334-393)||(22548189-22548248)
chr1 (357-393)||(40643033-40643069)
chr1 (357-393)||(47899389-47899425)
[»] chr2 (6 HSPs)
chr2 (334-393)||(11759749-11759808)
chr2 (325-391)||(680172-680238)
chr2 (334-393)||(37745788-37745847)
chr2 (334-393)||(11650661-11650720)
chr2 (356-393)||(36307101-36307138)
chr2 (357-393)||(42650391-42650427)
[»] chr6 (5 HSPs)
chr6 (334-391)||(852677-852734)
chr6 (356-393)||(947694-947731)
chr6 (357-393)||(46201-46237)
chr6 (334-393)||(1349439-1349496)
chr6 (40-92)||(18263508-18263560)
[»] chr4 (5 HSPs)
chr4 (356-393)||(20911811-20911848)
chr4 (335-393)||(4243524-4243582)
chr4 (356-390)||(25405729-25405763)
chr4 (356-393)||(24364104-24364141)
chr4 (334-393)||(53158949-53159009)
[»] chr3 (5 HSPs)
chr3 (356-393)||(32112130-32112167)
chr3 (335-379)||(52736858-52736902)
chr3 (356-393)||(44489655-44489692)
chr3 (357-393)||(35264324-35264360)
chr3 (357-393)||(44771864-44771900)
[»] chr7 (3 HSPs)
chr7 (334-393)||(40491714-40491773)
chr7 (335-393)||(32683704-32683762)
chr7 (357-393)||(42481803-42481839)
[»] chr5 (2 HSPs)
chr5 (335-393)||(707661-707719)
chr5 (329-393)||(35108375-35108439)
[»] scaffold0695 (1 HSPs)
scaffold0695 (337-393)||(3370-3426)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 10026645 - 10026270
Alignment:
Q  18 gatggtaataaattactaatcaaatgtaatcacatgcgtcagtgttgtattggtcttggatactgacatgtgtcagaaaccacgggacaggctatagttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10026645 gatggtaataaattactaatcaaatgtaatcacatgcgtcattgttgtattggtcttggatattgacatgtgtcagaaaccacgggacaggctatagttt 10026546  T
Q  118 tggtgctattgaggtaattaaaggaataaaatatgatgcttttgtttaagagcaaggggatttttaggcaaaaaagttagggtgtggttaaatgaactgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10026545 tggtgctattgaggtaattaaaggaataaaatatgatgcttttgtttaagagcaaggggatttttaggcaaaaaagttagggtgtggttaaatgaactgt 10026446  T
Q  218 ttatcatattttgtgtattgagtaatgtggttatagtgtttctatagaacgtttgggttgtttttgtaagctattttagagagtttagtagagtgagatg 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10026445 ttatcatattttgtgtattgagtaatgtggttaaagtgtttctatagaacgtttgagttgtttttgtaagctattttagagagtttagtagagtgagatg 10026346  T
Q  318 gaaataggttatgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10026345 gaaataggttatgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 10026270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 10224274 - 10223899
Alignment:
Q  18 gatggtaataaattactaatcaaatgtaatcacatgcgtcagtgttgtattggtcttggatactgacatgtgtcagaaaccacgggacaggctatagttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  10224274 gatggtaataaattactaatcaaatgtaatcacatgcgtcagtgttgtattggtcttggatattgacatgtgtcagaaatcacgggacaggctatagttt 10224175  T
Q  118 tggtgctattgaggtaattaaaggaataaaatatgatgcttttgtttaagagcaaggggatttttaggcaaaaaagttagggtgtggttaaatgaactgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10224174 tggtgctattgaggtaattaaaggaataaaatatgatgcttttgtttaagagcaaggggatttttaggcaaaaaagttagggtgtggttaaatgaactgt 10224075  T
Q  218 ttatcatattttgtgtattgagtaatgtggttatagtgtttctatagaacgtttgggttgtttttgtaagctattttagagagtttagtagagtgagatg 317  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10224074 ttatcatattttgtgcattgagtaatgtggttaaagtgtttctatagaacgtttgagttgtttttgtaagctattttagagagtttagtagagtgagatg 10223975  T
Q  318 gaaataggttatgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10223974 gaaataggttatgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 10223899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 4662827 - 4662856
Alignment:
Q  364 tttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||||||||||||||||||||||||||    
T  4662827 tttgagtgaattgattatgtaaaattgatt 4662856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 18355761 - 18355798
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  18355761 aaattgattttgagtgaattgattttgtaaaattgatt 18355798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 14093024 - 14093080
Alignment:
Q  337 tttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||||||||| | ||||| | | | | ||||||||||||||||||||||||    
T  14093024 tttggttatgcagtgacaaaaatttattgtaattgaattgattatgtaaaattgatt 14093080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 32928064 - 32928028
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| |||||| |||||||||||||||||||||||    
T  32928064 aattgattttgagggaattgattatgtaaaattgatt 32928028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 3328166 - 3327791
Alignment:
Q  18 gatggtaataaattactaatcaaatgtaatcacatgcgtcagtgttgtattggtcttggatactgacatgtgtcagaaaccacgggacaggctatagttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  3328166 gatggtaataaattactaatcaaatgtaatcacatgcgtcagtgttgtattggtcttggatactgacatgcgtcagaaatcacgggacaggctatagttt 3328067  T
Q  118 tggtgctattgaggtaattaaaggaataaaatatgatgcttttgtttaagagcaaggggatttttaggcaaaaaagttagggtgtggttaaatgaactgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3328066 tggtgctattgaggtaattaaaggaataaaatatgatgcttttgtttaagagcaaggggatttttaggcaaaaaagttagggtgtggttaaatgaactgt 3327967  T
Q  218 ttatcatattttgtgtattgagtaatgtggttatagtgtttctatagaacgtttgggttgtttttgtaagctattttagagagtttagtagagtgagatg 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |    
T  3327966 ttatcatattttgtgtattgagtaatgtggttaaagtgtttctatagaacgtttgagttgtttttgtaagctatttttgagagtttagtagagtgagacg 3327867  T
Q  318 gaaataggttatgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3327866 gaaataggttatgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 3327791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 11817229 - 11817266
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||||||||||||||||| |||||||||||||    
T  11817229 aaattgagtttgagtgaattgattttgtaaaattgatt 11817266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 3516002 - 3515943
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||||||| ||||    |||||  ||||||||||||||||||||||||||||||    
T  3516002 atgtttggttatgcggtgattagaattggttttgagtgaattgattatgtaaaattgatt 3515943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 22548189 - 22548248
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||| ||| |||| | ||||||| ||| |||||||||||| |||||||||||||    
T  22548189 atgtttggttttgcggtgataaaaattgattttaagtgaattgattttgtaaaattgatt 22548248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 40643069 - 40643033
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| |||||||||||||||| |||||||||||||    
T  40643069 aattgattttgagtgaattgattctgtaaaattgatt 40643033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 47899425 - 47899389
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| |||||||||||||||| |||||||||||||    
T  47899425 aattgattttgagtgaattgattttgtaaaattgatt 47899389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 11759749 - 11759808
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||    
T  11759749 atgtttggttatgaggtgaaaaaaattgagtttgagtgaattgattttgtaaaattgatt 11759808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 680172 - 680238
Alignment:
Q  325 gttatgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattga 391  Q
    |||| ||| |||||||||||||  |||| ||||||||| ||||||||||||||||||||||| ||||    
T  680172 gttaagtgtatgtttggttatgttgtgagagaaattgattttgagtgaattgattatgtaaagttga 680238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 37745788 - 37745847
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||| ||| |||| |  |||||| ||||||||||||||||||||||||||||||    
T  37745788 atgtttggttttgcggtgataataattgattttgagtgaattgattatgtaaaattgatt 37745847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 11650661 - 11650720
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||| |||  ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  11650661 atgtttggttttgcgttgacaaaaattgattttgagtgaattgattatgtaaatttgatt 11650720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 36307138 - 36307101
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||  |||||||||||||||||||||||||||||    
T  36307138 aaattgatcttgagtgaattgattatgtaaaattgatt 36307101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 42650427 - 42650391
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  42650427 aattgattttgagtgaattgattatgtaaatttgatt 42650391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 852734 - 852677
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattga 391  Q
    |||||||||| ||| ||||||  | ||||||||||||||||||||| |||||||||||    
T  852734 atgtttggttttgctgtgaaaatagttgagtttgagtgaattgattctgtaaaattga 852677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 947731 - 947694
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  947731 aaatttagtttgagtgaattgattctgtaaaattgatt 947694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 46201 - 46237
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| |||||||||||||||| |||||||||||||    
T  46201 aattgattttgagtgaattgattctgtaaaattgatt 46237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 1349496 - 1349439
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||| || ||||| | |||||||  ||||||||||||||| |||||||||||||    
T  1349496 atgtttggttgtgtagtgacaaaaattga--ttgagtgaattgattttgtaaaattgatt 1349439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 18263508 - 18263560
Alignment:
Q  40 aatgtaatcacatgcgtcagtgttgtattggtcttggatactgacatgtgtca 92  Q
    |||||| ||||||| ||||||||||| | ||| ||||||||| ||||||||||    
T  18263508 aatgtagtcacatgtgtcagtgttgtgtgggtattggatactaacatgtgtca 18263560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 20911811 - 20911848
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  20911811 aaattgattttgagtgaattgattatgtaaaattgatt 20911848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 4243582 - 4243524
Alignment:
Q  335 tgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| ||||||||||| | ||||||| |||||||  || ||||||||||||||||||    
T  4243582 tgtttgattatgcagtgacataaattgattttgagttgatagattatgtaaaattgatt 4243524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 25405763 - 25405729
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattg 390  Q
    ||||||| |||||||||||||||||||||||||||    
T  25405763 aaattgattttgagtgaattgattatgtaaaattg 25405729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 24364104 - 24364141
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  24364104 aaattgattttgaatgaattgattatgtaaaattgatt 24364141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 53158949 - 53159009
Alignment:
Q  334 atgtttggttatgcagtgaaagaaa-ttgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||| ||| |||| | ||| |||| ||||||||||||||| ||||||||||||||    
T  53158949 atgtttggttttgcggtgacaaaaagttgattttgagtgaattgatcatgtaaaattgatt 53159009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 32112167 - 32112130
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  32112167 aaattgattttgagtgaattgattatgtaaaattgatt 32112130  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 52736902 - 52736858
Alignment:
Q  335 tgtttggttatgcagtgaaagaaattgagtttgagtgaattgatt 379  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||    
T  52736902 tgtttggttatgcagtgaaagaaattgattttggttgaattgatt 52736858  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 44489692 - 44489655
Alignment:
Q  356 aaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  44489692 aaattgattttgagtgaattgataatgtaaaattgatt 44489655  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 35264324 - 35264360
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| |||||||||||||||| |||||||||||||    
T  35264324 aattgattttgagtgaattgattctgtaaaattgatt 35264360  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 44771900 - 44771864
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  44771900 aattgattttgaatgaattgattatgtaaaattgatt 44771864  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 40491773 - 40491714
Alignment:
Q  334 atgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||| ||| |||| |  |||||| |||||||||||||||| |||||||||||||    
T  40491773 atgtttggttctgcggtgacaagaattgattttgagtgaattgattctgtaaaattgatt 40491714  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 32683762 - 32683704
Alignment:
Q  335 tgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||||| |||||||  | ||||||| ||||| ||||||||||||||| ||||||||    
T  32683762 tgtttggttgtgcagtgggaaaaattgattttgattgaattgattatgtagaattgatt 32683704  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 42481803 - 42481839
Alignment:
Q  357 aattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgatt 42481839  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 707719 - 707661
Alignment:
Q  335 tgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    ||||||||||| | |||| | ||||||| |||| ||||||||||||||||| |||||||    
T  707719 tgtttggttatcccgtgataaaaattgattttgcgtgaattgattatgtaagattgatt 707661  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 35108439 - 35108375
Alignment:
Q  329 tgtggatgtttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||| |||||||||| |||  ||||| ||||| | |||||||||||| ||| |||||||||||||    
T  35108439 tgtgtatgtttggttttgcgatgaaaaaaatttattttgagtgaattaattctgtaaaattgatt 35108375  T

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Target: scaffold0695 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 3426 - 3370
Alignment:
Q  337 tttggttatgcagtgaaagaaattgagtttgagtgaattgattatgtaaaattgatt 393  Q
    |||||||||||||||| | ||||| | | | | ||||||||||||||||||||||||    
T  3426 tttggttatgcagtgacaaaaatttattgtaattgaattgattatgtaaaattgatt 3370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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