View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5929_low_5 (Length: 239)
Name: NF5929_low_5
Description: NF5929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5929_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 660445 - 660220
Alignment:
| Q |
1 |
cgaccaaacatctctaattagattaatgaacannnnnnnnn----ctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttc |
96 |
Q |
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| T |
660445 |
cgaccaaacatctctaattagattaatgaacatttttttttttttctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttc |
660346 |
T |
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| Q |
97 |
aactcagatttcttgaactggtttttcatttatcttggattcgtgctaatatatgtggagaaaatacaactcaaataaagccctaatgcacattgcacat |
196 |
Q |
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| T |
660345 |
aactcagatttcttgaactagtttttcatttatcttggattcatgctaatatatgtggagaaaatacaactcaaataaagccctaatgcacattgcacat |
660246 |
T |
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| Q |
197 |
cagtgtataaaattttgactatagat |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
660245 |
cagtgtataaaattttgactatagat |
660220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 22070977 - 22071131
Alignment:
| Q |
42 |
ctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtg |
141 |
Q |
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| T |
22070977 |
ctctttcttgcattttgtat--tattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatg |
22071074 |
T |
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| Q |
142 |
ctaatatatgtggagaaaatacaactcaaataaagccctaatgcacattgcacatcagtg |
201 |
Q |
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| T |
22071075 |
ctaatatatgtggagaaaatacaacttaaatatggccctaatgca---tgcacatcagtg |
22071131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 22064987 - 22065146
Alignment:
| Q |
12 |
ctctaattagattaatgaacannnnnnnnnctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttg |
111 |
Q |
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| T |
22064987 |
ctctaattagattaatgaacattctttttgctctttcttgcattttgtaa--tatttaagcatagtaaggaaattattcgatttcaactcaaatttcttg |
22065084 |
T |
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| Q |
112 |
aactggtttttcatttatcttggattcgtgctaatatatgtggagaaaatacaactcaaata |
173 |
Q |
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|||| |||||| || ||||||||||| || | | ||||||||||||||||||||| ||||| |
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| T |
22065085 |
aactagtttttagttgatcttggattcatgtttacatatgtggagaaaatacaacttaaata |
22065146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 22082314 - 22082416
Alignment:
| Q |
88 |
tttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtg----ctaatatatgtggagaaaatacaactcaaataaagccctaat |
183 |
Q |
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|||| |||||||||| |||| ||| |||||||||| ||| |||| ||||| | |||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
22082314 |
tttgatttcaactcaaattttttgtactggtttttaattgatctatgattcatatatactaatatatgtggagaaaatacaacttaaatatggccgtaat |
22082413 |
T |
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| Q |
184 |
gca |
186 |
Q |
| |
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||| |
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| T |
22082414 |
gca |
22082416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 15963235 - 15963311
Alignment:
| Q |
61 |
tattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggatt |
137 |
Q |
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||||||| ||||||| ||| | ||||||||||||||| |||| |||||| |||| |||||| ||| |||||||||| |
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| T |
15963235 |
tattatttatgcctaaatagaaggttatttggtttcaattcagttttcttaaacttgtttttaattcatcttggatt |
15963311 |
T |
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