View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930-Insertion-1 (Length: 795)
Name: NF5930-Insertion-1
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930-Insertion-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 9 - 795
Target Start/End: Complemental strand, 8443489 - 8442713
Alignment:
| Q |
9 |
ctttctaatcatttatcgacaagtattttgaggaaggaactatggaaaaaagagagaaaacgtaagttgagcaaaaacagtgcgatcaaccaacgtgtaa |
108 |
Q |
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| T |
8443489 |
ctttctaatcatttctcgacaagtattttgaggaaggaactatggaaaaa-gagagaaaacgtaagttgagcaaaaacagtgcgatcaaccaacgtgtaa |
8443391 |
T |
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| Q |
109 |
gtcacgaattggtgaatttgttattcaactttacgtagaagataaacaaagaaaagacnnnnnnntaactccaaaacattcctcctaagggcatgccttt |
208 |
Q |
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| T |
8443390 |
gtcacgaattggtgaatttgttattcaactttacgtagaagataaacaaagaaaagacaaaaaaa-aactccaaaacattcctcctaagggcatgccttt |
8443292 |
T |
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| Q |
209 |
gattaccccataaccccaccttctcttgtctagctccaacaaaataataaatataattcttttcaagagttagcatcactcttcaaattacattaactca |
308 |
Q |
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| T |
8443291 |
gattaccccataaccccaccttctcttgtctagctccaacaaaataataaatataattcttttcaagagttagcatcactcttcaaattacattaactca |
8443192 |
T |
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| Q |
309 |
acatattattcctttcaaacacattctaacaaacattagtgatagtttatcaatatgtgttgactgttgaccaatttaaatggtcatactta-ttttatt |
407 |
Q |
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| T |
8443191 |
acatattattcctttcaaacacattctaacaaacattagtgatagtttatcaatatgtgttgactgttgaccaatttaaatggtcatacctatttttatt |
8443092 |
T |
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| Q |
408 |
gaatttaagggagatataattaaattcaatgagtgtgtaacactaaatataagaaattctttttagttgagattcaaacattgattcactaagacgtgga |
507 |
Q |
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| T |
8443091 |
gaatttaagggagatataattaaattagat--gtgtgtaacac------taagtaatt-tttttagttgagattcaaacattgatgcattaagatgtgga |
8443001 |
T |
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| Q |
508 |
ggttaaacttattttgctaaaccccaccccgtttgttattgtagttaatttttaagacgtatgtatttacaaattgtatatatttttcacaaataaaata |
607 |
Q |
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| T |
8443000 |
agttgaacttattttgctagatcccatcccgtttgttattctagttaacttttaagacgtatgtatttacaaattatatatatttttcataaataaaata |
8442901 |
T |
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| Q |
608 |
aaattaacatttttacatttgcaaggaactaaatgatattgcaatgtctacacacatctgttgcaccgataatcctaatcgaaaatgtgtctcagtgtcc |
707 |
Q |
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| T |
8442900 |
aaattaacagttttacatttgcaaggaatcaaatgatattgcaatgtctacacacctctgttgcaccgataattctaatcgaaaatgtgttttagtgtcc |
8442801 |
T |
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| Q |
708 |
aacatatgtcatgtctaaagatgacaccgacacttatgattatattaagttatgttattttttaaaaaatttattcattattgtgtct |
795 |
Q |
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| T |
8442800 |
aacatatgtcatgtccgaagatgacaccgacacctttgattatattaagttatgttatttttttaaaattttattcattattgtgtct |
8442713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 728 - 770
Target Start/End: Original strand, 17257988 - 17258030
Alignment:
| Q |
728 |
atgacaccgacacttatgattatattaagttatgttatttttt |
770 |
Q |
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| T |
17257988 |
atgacaccgacacttatgattacattgaattatgttatttttt |
17258030 |
T |
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