View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5930-Insertion-2 (Length: 790)

Name: NF5930-Insertion-2
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5930-Insertion-2
NF5930-Insertion-2
[»] chr1 (1 HSPs)
chr1 (7-790)||(35481598-35482381)


Alignment Details
Target: chr1 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 7 - 790
Target Start/End: Original strand, 35481598 - 35482381
Alignment:
Q  7 caaaaacgacacaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctctgccaccacaatacca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35481598 caaaaacgacacaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctccgccaccacaatacca 35481697  T
Q  107 aactccccttcctttcttatctcagaaggtgcttccataatcaccctttctccttcctcagctttacacacgggcaaaacaaccaccgaggtcgcctcag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35481698 aactccccttcctttcttatctcagaaggtgcttccataatcaccctttctccttcctcagctttacacacgggcaaaacaaccaccgaggtcgcctcag 35481797  T
Q  207 ctacttcaccaatcttcaatctcaccacattaacaggtacttttaatacaacatcttcaacttcctcctcttcagcctttccatttagctcctccaaaat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||    
T  35481798 ctacttcaccaatcttcaatctcaccacattaacaggtacttttaatacaacatcttcaaccttctcctcttcagcctttccattcaactcctccaaaat 35481897  T
Q  307 cacgtttctagctttatcagactctacagcactcaacgcttgttgaagaaaagcagttcttggatcagaaggattcttattcyccttactttgtctgtaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  35481898 cacgtttctagctttatcagactctacagcactcaacgcttgttgaagaaatgcagttcttggatcagaaggattcttattctccttactttgtctgtaa 35481997  T
Q  407 tacaaataagcaagacaatctcctgggagatgataatcaaaactttcccagtgcttttcgccgcgtctgctagggaaatcctttatcgaacgagctagat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35481998 tacaaataagcaagacaatctcctgggagatgataatcaaaactttcccagtgcttttcgccgcgtctgctagggaaatcctttatcgaacgagctagat 35482097  T
Q  507 cttgagcacctttaccatcatatctcttctccacaatgaaacgtgctgcagcagcacgttgggaagtggagaggagacgaatttcatataaaacttcagc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35482098 cttgagcacctttaccatcatatctcttctccacaatgaaacgcgctgcagcagcacgttgggaagtggagaggagacgaatttcatataaaacttcagc 35482197  T
Q  607 accaccgctatcaaagtaagatagaatctcttcatcagtgttggcctgtacaagagtgtcacgaacttgagttgcgactatgatacgattctgttcgaca 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35482198 accaccgctatcaaagtaagatagaatctcttcatcagtgttggcctgtacaagagtgtcacgaacttgagttgcgactatgatacgattctgttcgaca 35482297  T
Q  707 ccggtgatgccggtggtttcttcaagggtgggaggtgaaaagccttcacggaggagggaagtgatgagaggagcgtattcgtgc 790  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35482298 ccggtgatgccggtggtttcttcaagggtgggaggtgaaaagccttcacggaggagggaagtgatgagaggagcgtattcgtgc 35482381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University