View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5930-Insertion-4 (Length: 352)

Name: NF5930-Insertion-4
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5930-Insertion-4
NF5930-Insertion-4
[»] chr4 (1 HSPs)
chr4 (9-352)||(37752937-37753280)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 37752937 - 37753280
Alignment:
Q  9 atatgttcctcttaatggagtatattctatatcatctaactttttatagtttctactttctgtgcatatttgaatcatggacaaaaacataattatgaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37752937 atatgttcctcttaatggagtatattctatatcatctaactttttatagtttctactttctgtacatatttgaatcatggacaaaaacataattatgaaa 37753036  T
Q  109 attaatgagcacaaataagttaaatctct-aaaagaagttcgcaaaatgattgttaatgttaccttaagtaatactccctttagtggagactagctagct 207  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37753037 attaatgagcacaaataagttaaatccctaaaaaaaagttcgcaaaatgattgttaatgttaccttaagtaatactccctttagtggagactagctagct 37753136  T
Q  208 cctatcgtcagattcaacctttgttgtttnnnnnnnngattggtttgaaggaatacaagatgcttacatcgaaaaataagtgaattcttgtgtgcttttt 307  Q
    |||||||| ||||||||||||||||| ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37753137 cctatcgttagattcaacctttgttggttaaaaaaaagattggtttgaaggaatacaagatgcttacatcgaaaaataagtgaattcttgtgtgc-tttt 37753235  T
Q  308 agattagaaaaaatgtgaaactcggtttaatctaagtaaagatcc 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37753236 agattagaaaaaatgtgaaactcggtttaatctaagtaaagatcc 37753280  T

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