View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5930-Insertion-5 (Length: 294)
Name: NF5930-Insertion-5
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930-Insertion-5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 14870427 - 14870141
Alignment:
| Q |
8 |
agttccaatgtagaatgatgcttactaagttgataccaaatcaacctccaatttgttattaaccnnnnnnncaagtttgaatgacttaagctcctcaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14870427 |
agttccaatgtagaatgatgcttactaagttgataccaaatcaacctccaatttgttattaacctttttttcaagtttgaatgacttaagctcctcaatt |
14870328 |
T |
|
| Q |
108 |
agttgtttcaacccagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgctttagctttcttcctcatttctaaacactctt |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14870327 |
agttgtttcaacttagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgctttagctttcttcctcatttctaaacactctt |
14870228 |
T |
|
| Q |
208 |
ctccacctcctatcaataaacctattgcctttcctatctgatccctcttaaccacatcatccccaaactcattccagtttctccatt |
294 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14870227 |
ctccacctcccatcaataaacctattgcctttcctatctcatccctcttaaccacatcatccccaaactcattccagtttctccatt |
14870141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 16908303 - 16908518
Alignment:
| Q |
79 |
caagtttgaatgacttaagctcctcaattagttgtttcaacccagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgcttt |
178 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16908303 |
caagtttaaatgacttaagctcctcaattagttctttcaacttagtataagaagaaccaccaacctcaatagctttctttgcagcaccactaagtgcttt |
16908402 |
T |
|
| Q |
179 |
agctttcttcctcatttctaaacactcttctccacctcctatcaataaacctattgcctttcctatctgatccctcttaaccacatcatccccaaactca |
278 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
16908403 |
aactcttttcctcatttctaaacactcttctccacctcccatcaataaacctattgcctttcctatatcctccctcttcaccacatcatccccaaactca |
16908502 |
T |
|
| Q |
279 |
ttccagtttctccatt |
294 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
16908503 |
ttccaatttctccatt |
16908518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University