View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930-Insertion-6 (Length: 335)
Name: NF5930-Insertion-6
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 2176741 - 2177070
Alignment:
| Q |
9 |
acagaatggtaactcggtccattgggagtgctataagctcagaagcaacatccttgaatggaagaactcc---ttctttgcatttaaattttgacagtaa |
105 |
Q |
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| T |
2176741 |
acagaatggtaactcggtccattgggagtgctataagttcagaagcaacatccttgaatggaagaactcctccttctttgcatttaaattttgacagtaa |
2176840 |
T |
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| Q |
106 |
cttagctgcttcttcctttgtcatcctcaccttcactctagtaacattcatcctttctctttctcctaataattcatcaatataattactaccacagctt |
205 |
Q |
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| T |
2176841 |
cttagctgcttcttcctttgtcatctttaccttcactctagtaacattcatcctttctctttctcctaataattcatcaatataattactaccacagctt |
2176940 |
T |
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| Q |
206 |
cttcttcctttcatcaactcatccttttcatcttgttctgaatccgcaaaacgaacacttttcctaactccctttcttgttaggggagagatgatctttt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2176941 |
cttcttcctttcatcaactcatccttttcatcttgttctgaatccgcaaaccgaacacttttcctaactgcctttcttgttaggggagatatgatctttt |
2177040 |
T |
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| Q |
306 |
tattgcctacctcatctttgtaggttattg |
335 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2177041 |
tattgcctacctcatctttgtaggttattg |
2177070 |
T |
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