View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_high_14 (Length: 252)
Name: NF5930_high_14
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 52836438 - 52836192
Alignment:
| Q |
11 |
cagagacatggacaatgaaaacaactaatcagtaaaagaaaggcaaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcaatg |
110 |
Q |
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| T |
52836438 |
cagagacatggacaatgaaaacaactaatcagtaaaagaaaggctaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcattt |
52836339 |
T |
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| Q |
111 |
t------tttttgtcacgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttccttt |
204 |
Q |
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| T |
52836338 |
tccgacttttttgtcacgtttcataaccctgtcaaccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttccttt |
52836239 |
T |
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| Q |
205 |
ttatacattggcaccatactaacacaaaatacaaaagatgcacttcct |
252 |
Q |
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| T |
52836238 |
ttataca-tggcaccatactaacacaaaatacaaaagatggacttcct |
52836192 |
T |
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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 48967517 - 48967683
Alignment:
| Q |
18 |
atggacaatgaaaacaactaatcagtaaaagaaaggc-aaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcaat------- |
109 |
Q |
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| T |
48967517 |
atggactatcaaaacaactaatcagtcaaagaaaggcgaaaaaagctcacaatctcaggacattcataatcaatgccagcagcctctatctttttacgtc |
48967616 |
T |
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| Q |
110 |
gttttttgtcacgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaa |
176 |
Q |
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| T |
48967617 |
gttttttgtcacgcttcataactctatcaaccaactttttgtgttcttccaatgttctttcctgaaa |
48967683 |
T |
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