View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5930_high_17 (Length: 236)
Name: NF5930_high_17
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_high_17 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 35481598 - 35481820
Alignment:
| Q |
14 |
caaaaacgacacaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctctgccaccacaatacca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35481598 |
caaaaacgacacaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctccgccaccacaatacca |
35481697 |
T |
|
| Q |
114 |
aactccccttcctttcttatctcagaaggtgcttccataatcaccctttctccttcctcagctttacacacgggcaaaacaaccaccgaggtcgcctcag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35481698 |
aactccccttcctttcttatctcagaaggtgcttccataatcaccctttctccttcctcagctttacacacgggcaaaacaaccaccgaggtcgcctcag |
35481797 |
T |
|
| Q |
214 |
ctacttcaccaatcttcaatctc |
236 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35481798 |
ctacttcaccaatcttcaatctc |
35481820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University