View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_high_4 (Length: 404)
Name: NF5930_high_4
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 41486805 - 41486430
Alignment:
| Q |
11 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
110 |
Q |
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| T |
41486805 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
41486706 |
T |
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| Q |
111 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttaaaatgaatttaacttcaagacaaaaatttaaaccag |
210 |
Q |
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| T |
41486705 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttcaaatgaatttaacttcaagacaaaaatttaaaccag |
41486606 |
T |
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| Q |
211 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaaattccaaaaaacttcaactcctttca |
310 |
Q |
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| T |
41486605 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaatttccaaaaaacttcaactcctttca |
41486506 |
T |
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| Q |
311 |
aagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaac |
386 |
Q |
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| T |
41486505 |
aagttttaacacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaac |
41486430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 73 - 386
Target Start/End: Complemental strand, 41487610 - 41487298
Alignment:
| Q |
73 |
gctaattgttataaaaacagttcaaactaaatcaagaatataac-gcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgat |
171 |
Q |
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| T |
41487610 |
gctaattgtta-aagaacagttcaaactaactcaagactataaatggttttttattgtatggaaa-------atgctttatttttaggctcaggtacgat |
41487519 |
T |
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| Q |
172 |
ttaaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaattgataccacctactcgtcgtgattaattttcaac |
263 |
Q |
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| T |
41487518 |
ttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agacgattgataccaccaactcgtctcgattactttttaac |
41487420 |
T |
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| Q |
264 |
ataaatttcaataatcaacaaattccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacat |
363 |
Q |
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| T |
41487419 |
atatattttagtaatcaacaatttc-aaaaaacttcaactcgttacaaagttttaaaccttaagtcacaagcattatctgctaaaaaagtgctcctacat |
41487321 |
T |
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| Q |
364 |
gataagtaactatatataacaac |
386 |
Q |
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| T |
41487320 |
gataagtaatgatatataacaac |
41487298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 40753805 - 40753660
Alignment:
| Q |
192 |
agacaaaaatttaaaccagactacaaaagggagacaattga---taccacct---actcgtcgtgattaattttcaacataaatttcaataatcaacaaa |
285 |
Q |
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| T |
40753805 |
agacaaaaatttaaaccaggcaacaaaagggagacgattgatagtaccacctaccactcaccttgattactttttgacatatgtttcagtaatcaac-aa |
40753707 |
T |
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| Q |
286 |
ttccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcata |
332 |
Q |
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| T |
40753706 |
tttcaaaaaacttcaacttgtttcgaagttttaacccaaaagtcata |
40753660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 41479473 - 41479424
Alignment:
| Q |
188 |
ttcaagacaaaaatttaaaccagactacaaaagggagacaattgataccac |
238 |
Q |
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| T |
41479473 |
ttcaagacaaaaatttaaaccaaactac-aaagagagacaattgataccac |
41479424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 40753958 - 40753902
Alignment:
| Q |
50 |
aattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaa |
107 |
Q |
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| T |
40753958 |
aattttttttaaggcaacatctagctgattgtt-taaaaacagttcaaactaaatcaa |
40753902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 40753883 - 40753830
Alignment:
| Q |
99 |
ctaaatcaagaatataacgcttttttattgtatggaaatgatataatgctttattttta |
157 |
Q |
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| T |
40753883 |
ctaaatcaagaatataatgctttt-----gtatggaaatgatataatgctttatcttta |
40753830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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