View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_high_7 (Length: 381)
Name: NF5930_high_7
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 2177103 - 2176741
Alignment:
| Q |
1 |
aaaaattagaagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatctctcccctaacaagaaagggagttag |
100 |
Q |
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| T |
2177103 |
aaaaattagcagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatatctcccctaacaagaaaggcagttag |
2177004 |
T |
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| Q |
101 |
gaaaagtgttcgttttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatgaattattagga |
200 |
Q |
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| T |
2177003 |
gaaaagtgttcggtttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatgaattattagga |
2176904 |
T |
|
| Q |
201 |
gaaagagaaaggatgaatgttactagagtgaaggtgaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaagaa---ggagttc |
297 |
Q |
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| T |
2176903 |
gaaagagaaaggatgaatgttactagagtgaaggtaaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaagaaggaggagttc |
2176804 |
T |
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| Q |
298 |
ttccattcaaggatgttgcttctgagcttatagcactcccaatggaccgagttaccattctgt |
360 |
Q |
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| T |
2176803 |
ttccattcaaggatgttgcttctgaacttatagcactcccaatggaccgagttaccattctgt |
2176741 |
T |
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