View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5930_high_8 (Length: 353)
Name: NF5930_high_8
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 69 - 273
Target Start/End: Complemental strand, 29426273 - 29426069
Alignment:
| Q |
69 |
tatacatagaacatatttaagaatgaggtaacttttagcgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagcca |
168 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29426273 |
tatacataggacatatttaagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagcca |
29426174 |
T |
|
| Q |
169 |
tgattctaccaggctcagcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29426173 |
tgattctaccaggctcagcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgc |
29426074 |
T |
|
| Q |
269 |
taaga |
273 |
Q |
| |
|
||||| |
|
|
| T |
29426073 |
taaga |
29426069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 108 - 338
Target Start/End: Complemental strand, 29461501 - 29461274
Alignment:
| Q |
108 |
gaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccattaagaccattaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
29461501 |
gaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaa |
29461402 |
T |
|
| Q |
208 |
gtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgctaagaagcttcctgatctattaagaccacaacatgattc |
307 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||| |||||| ||| ||| |
|
|
| T |
29461401 |
gtaacctcttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcc---tctattaaggccacaatatgcttc |
29461305 |
T |
|
| Q |
308 |
ctcttcactctcacccatgttgcatcctttg |
338 |
Q |
| |
|
||| ||||||||| |||||||| |||||||| |
|
|
| T |
29461304 |
ctcatcactctcatccatgttgtatcctttg |
29461274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 29426305 - 29426271
Alignment:
| Q |
18 |
gtttgagcatttgaagttaagaaaagaagaactat |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
29426305 |
gtttgagcatttgaagttaagaaaagaagaactat |
29426271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
122 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
175 |
Q |
| |
|
|||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
132 |
gtggattttccagagccagaaggacccataatagcca |
168 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 36068412 - 36068332
Alignment:
| Q |
132 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccattaagaccattaagtaac |
212 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| | | ||||| ||||||| |
|
|
| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaac |
36068332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University