View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_low_1 (Length: 645)
Name: NF5930_low_1
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Original strand, 52582767 - 52583398
Alignment:
| Q |
1 |
ccataaaagaaaaagtgaaagaaatttgtcgccttagtctctactactataataaatgcttaagaggctaaattaacatatcattagnnnnnnnggaaag |
100 |
Q |
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| T |
52582767 |
ccataaaagaaaaagtgaaagaaatttgtcgccttagtctctactactataataaatgcttaagaggctaaattaacatat---tagaaaaaaaggaaag |
52582863 |
T |
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| Q |
101 |
gggtagtttttggataaggaattacttggtttttggttaaacctgtttgggaagccaggattaacttctcagaatcattaggatagctgcaaaaatcaga |
200 |
Q |
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| T |
52582864 |
gggtagtttttggataaggaattacttggtttttggttaaacctgtttgggaagccaggattaacttctcagaatcattaggatagctgcaaaaatcaga |
52582963 |
T |
|
| Q |
201 |
catcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaatagaattttgaaataagcttacggatgaagaaagtgctcaaag |
300 |
Q |
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| T |
52582964 |
catcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaaag |
52583063 |
T |
|
| Q |
301 |
agccaagcacgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagaca |
400 |
Q |
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| T |
52583064 |
agccaagcacgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagaca |
52583163 |
T |
|
| Q |
401 |
ttctagtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatt |
500 |
Q |
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| T |
52583164 |
ttctagtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatt |
52583263 |
T |
|
| Q |
501 |
tatttgggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatc |
600 |
Q |
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| T |
52583264 |
tatttgggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatc |
52583363 |
T |
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| Q |
601 |
atttcaaaagatgatactacttcttccatttgatg |
635 |
Q |
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| T |
52583364 |
atttcaaaagatgatactacttcttccatttgatg |
52583398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 52591061 - 52591105
Alignment:
| Q |
275 |
cttacggatgaagaaagtgctcaaagagccaagcacgaagaattg |
319 |
Q |
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| T |
52591061 |
cttacggattaagaaaatgttcaaagagccaagcacgaagtattg |
52591105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 43242984 - 43242935
Alignment:
| Q |
295 |
tcaaagagccaagcacgaagaattgctacagatgtttcaggtaaccctct |
344 |
Q |
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|||||||||||||||||||||| | ||||||| |||||||||| ||||| |
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| T |
43242984 |
tcaaagagccaagcacgaagaacagatacagatctttcaggtaatcctct |
43242935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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