View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_low_11 (Length: 310)
Name: NF5930_low_11
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 51735739 - 51735447
Alignment:
| Q |
18 |
aaaatttactaccaaacttcaactgatcaacatcatctcttctattcaattaaaataacttaccggctatcgctgttcttataatgagattacccattga |
117 |
Q |
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| T |
51735739 |
aaaatttactaccaaacttcaactgatcaacatcatctcttctattcaattaaaataacttaccggctatcgctgttcttataatgagattacccattga |
51735640 |
T |
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| Q |
118 |
atgtccaacaaaacttagcttaatatctcccagtttcccgtatcttgttactttgtccattttgcttttaacaagagaaataacttcctgagctagccta |
217 |
Q |
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| T |
51735639 |
atgtccaacaaaacttagcttaatatctcccagtttcccgtatcttgttactctgtccattttgcttttaacaaaagaaataacttcctgagctagccta |
51735540 |
T |
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| Q |
218 |
tgtcccatttctttgaaatctccatttgttttatcttcattagcctctgacatgagaaattctactttaggatctatcaaaagccattgattc |
310 |
Q |
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| T |
51735539 |
tgtcccatttctttgaaatctccatttgttttatcttcattagcctctgacatgagaaattctactttaggatctatcaaaagccattgattc |
51735447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 309
Target Start/End: Complemental strand, 357115 - 356884
Alignment:
| Q |
78 |
taccggctatcgctgttcttataatgagattacccattgaatgtccaacaaaacttagcttaatatctcccagtttcccgtatcttgttactttgtccat |
177 |
Q |
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| T |
357115 |
taccagctattgctgttcttataatgaggttgccaatagaatgtccaacaaaactcagtctaatatccctcagatttccacatcttgattctttatccat |
357016 |
T |
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| Q |
178 |
tttgcttttaacaagagaaataacttcctgagctagcctatgtcccatttctttgaaatctccatttgttttatcttcattagcctctgacatgagaaat |
277 |
Q |
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| T |
357015 |
tttctttttaacaaaggaaataacttcctgcgctagcctttgacccatttctctgaagtcacccgatgttttatcttcattagcctgtgacatcagaact |
356916 |
T |
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| Q |
278 |
tctactttaggatctatcaaaagccattgatt |
309 |
Q |
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||||| || ||||| ||||||| ||||||||| |
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| T |
356915 |
tctaccttgggatccatcaaaacccattgatt |
356884 |
T |
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