View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_low_18 (Length: 233)
Name: NF5930_low_18
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 26454974 - 26454798
Alignment:
| Q |
1 |
accaaaacaactttgggaaccnnnnnnncagcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgatggctatcaaagtct |
100 |
Q |
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| T |
26454974 |
accaaaacaactttgggaaccaaaaaaacagcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgatggctatcaaagtct |
26454875 |
T |
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| Q |
101 |
ttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagctacac |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454874 |
ttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagctacac |
26454798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 26446767 - 26446627
Alignment:
| Q |
30 |
agcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactata |
129 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
26446767 |
agcaatgtaaggagaaggctttcggaggtgataagcgtagcttcaaagaagcatgatggctatcaaagtctttccacgaccaatctccaagtacactata |
26446668 |
T |
|
| Q |
130 |
gtattttcgcgaatcgctttatccaatgcttcaagttgata |
170 |
Q |
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| T |
26446667 |
gtattttcgcgaatcgctttatccaatgcttcaagttgata |
26446627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 26448801 - 26448936
Alignment:
| Q |
48 |
ctttcggaggtgataagtgtagcttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgct |
147 |
Q |
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| T |
26448801 |
ctttcagaggtgataagcgtagcttcaaagaagcatgatggctatcaaagtctctccacaaccaggctccaagtacactatagtattttcacgaatcact |
26448900 |
T |
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| Q |
148 |
ttatcc------aatgcttcaagttgatagctacac |
177 |
Q |
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|||||| ||||||| |||||||||||||||| |
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| T |
26448901 |
ttatccatggaaaatgctttaagttgatagctacac |
26448936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 29673869 - 29673694
Alignment:
| Q |
1 |
accaaaacaactttgggaaccnnnnnnncagcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgatggctatcaaagtct |
100 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29673869 |
accaaaacaactttgggaaccaaaaaaacagcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgatggctatcaaagtct |
29673770 |
T |
|
| Q |
101 |
ttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagctaca |
176 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
29673769 |
ttccacaaccagtctctaagtaaactatagtattttcgcggattgctttatccaatgcttcaagttggtagctaca |
29673694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 11495520 - 11495693
Alignment:
| Q |
1 |
accaaaacaactttgggaaccnnnnnnncagcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgatggctatcaaagtct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11495520 |
accaaaacaactttgggaaccaaaaacacagcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgatggctatcaaagtct |
11495619 |
T |
|
| Q |
101 |
ttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagcta |
174 |
Q |
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||||| |||||||||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||||| |
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| T |
11495620 |
ttccagaaccagtctccaagtacactatggtattttcacggatcgctttttccaatgcttcaagctgatagcta |
11495693 |
T |
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