View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5930_low_3 (Length: 445)

Name: NF5930_low_3
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5930_low_3
NF5930_low_3
[»] chr1 (47 HSPs)
chr1 (74-263)||(6693621-6693810)
chr1 (78-237)||(6248453-6248612)
chr1 (75-265)||(26344569-26344754)
chr1 (73-266)||(25559532-25559727)
chr1 (76-264)||(35375545-35375734)
chr1 (333-429)||(6693455-6693551)
chr1 (75-177)||(40094770-40094872)
chr1 (75-265)||(27507023-27507218)
chr1 (75-263)||(50471475-50471656)
chr1 (73-258)||(12973942-12974134)
chr1 (81-237)||(26063752-26063912)
chr1 (78-252)||(3937140-3937308)
chr1 (75-265)||(18310343-18310536)
chr1 (75-179)||(18834163-18834267)
chr1 (75-183)||(52380330-52380440)
chr1 (13-82)||(6693828-6693897)
chr1 (73-182)||(9330773-9330882)
chr1 (75-244)||(35979817-35979980)
chr1 (75-265)||(36202959-36203155)
chr1 (75-265)||(44056110-44056305)
chr1 (75-244)||(35992130-35992303)
chr1 (86-265)||(32909881-32910065)
chr1 (91-266)||(382448-382627)
chr1 (79-238)||(25507257-25507411)
chr1 (77-265)||(39157820-39158014)
chr1 (77-242)||(17989423-17989588)
chr1 (77-250)||(21685088-21685256)
chr1 (75-147)||(36782004-36782076)
chr1 (73-183)||(8269020-8269130)
chr1 (84-237)||(16063196-16063350)
chr1 (77-265)||(11072882-11073075)
chr1 (90-236)||(10847072-10847218)
chr1 (99-265)||(9961760-9961921)
chr1 (176-254)||(24630424-24630502)
chr1 (111-252)||(34721286-34721422)
chr1 (84-183)||(8165142-8165241)
chr1 (170-252)||(17652204-17652286)
chr1 (77-154)||(13056162-13056239)
chr1 (77-265)||(15881716-15881899)
chr1 (77-158)||(16537445-16537526)
chr1 (142-183)||(17652166-17652207)
chr1 (98-183)||(32937048-32937133)
chr1 (75-129)||(23474754-23474809)
chr1 (170-249)||(45949062-45949141)
chr1 (76-237)||(44828276-44828433)
chr1 (40-81)||(25559747-25559788)
chr1 (115-183)||(27455575-27455642)
[»] chr4 (46 HSPs)
chr4 (76-252)||(29233127-29233303)
chr4 (75-265)||(20986776-20986971)
chr4 (73-267)||(41325770-41325969)
chr4 (77-265)||(21069437-21069629)
chr4 (84-266)||(8485064-8485251)
chr4 (78-183)||(1564660-1564764)
chr4 (75-264)||(46471803-46471986)
chr4 (135-244)||(23625447-23625556)
chr4 (92-265)||(28148158-28148336)
chr4 (75-249)||(41312209-41312378)
chr4 (79-266)||(45464536-45464733)
chr4 (75-182)||(3666668-3666775)
chr4 (77-252)||(36105994-36106174)
chr4 (75-265)||(48338720-48338910)
chr4 (90-183)||(4642839-4642932)
chr4 (74-182)||(32222912-32223021)
chr4 (81-252)||(23449509-23449684)
chr4 (133-265)||(48653415-48653553)
chr4 (78-252)||(18319105-18319289)
chr4 (78-252)||(18396700-18396884)
chr4 (75-174)||(4689057-4689156)
chr4 (138-237)||(25686025-25686123)
chr4 (75-236)||(41260485-41260652)
chr4 (77-251)||(18399402-18399571)
chr4 (77-182)||(35232895-35233000)
chr4 (75-163)||(8312259-8312347)
chr4 (85-237)||(49641220-49641367)
chr4 (75-252)||(18536183-18536366)
chr4 (78-182)||(13715093-13715197)
chr4 (142-265)||(48292941-48293069)
chr4 (75-150)||(14867143-14867218)
chr4 (170-242)||(27743811-27743883)
chr4 (175-254)||(11031178-11031257)
chr4 (77-128)||(29701012-29701063)
chr4 (40-82)||(41325709-41325751)
chr4 (136-265)||(15724276-15724405)
chr4 (40-81)||(27743514-27743555)
chr4 (77-125)||(48685130-48685178)
chr4 (75-118)||(7763762-7763805)
chr4 (215-250)||(17845384-17845419)
chr4 (154-237)||(45150530-45150613)
chr4 (133-179)||(28927756-28927802)
chr4 (113-183)||(40494826-40494896)
chr4 (78-158)||(6102266-6102344)
chr4 (40-81)||(21069370-21069411)
chr4 (174-265)||(54273444-54273536)
[»] chr3 (37 HSPs)
chr3 (75-243)||(26758606-26758774)
chr3 (74-243)||(48169048-48169217)
chr3 (75-265)||(22255809-22256003)
chr3 (73-183)||(55467240-55467350)
chr3 (77-265)||(45914727-45914905)
chr3 (84-257)||(46252964-46253148)
chr3 (75-266)||(8355706-8355901)
chr3 (77-177)||(45629571-45629671)
chr3 (78-243)||(25918786-25918956)
chr3 (75-265)||(44651339-44651524)
chr3 (77-242)||(52632509-52632675)
chr3 (74-243)||(42362752-42362926)
chr3 (75-183)||(22472662-22472770)
chr3 (75-183)||(51660599-51660707)
chr3 (75-182)||(54122699-54122805)
chr3 (75-183)||(2831983-2832091)
chr3 (75-257)||(21562928-21563108)
chr3 (100-265)||(8557288-8557448)
chr3 (77-183)||(37045690-37045796)
chr3 (77-182)||(50578596-50578702)
chr3 (141-252)||(2565825-2565941)
chr3 (107-242)||(5640259-5640399)
chr3 (75-238)||(4280664-4280837)
chr3 (76-257)||(17144262-17144437)
chr3 (75-168)||(20846851-20846944)
chr3 (186-235)||(32120741-32120790)
chr3 (78-174)||(38681595-38681691)
chr3 (112-163)||(4639239-4639290)
chr3 (170-252)||(10481138-10481220)
chr3 (40-82)||(55467367-55467409)
chr3 (74-183)||(10481217-10481326)
chr3 (75-124)||(38651686-38651735)
chr3 (40-79)||(48168986-48169025)
chr3 (133-179)||(10744663-10744709)
chr3 (91-152)||(36330302-36330363)
chr3 (77-129)||(2565983-2566035)
chr3 (110-182)||(4669984-4670056)
[»] chr5 (40 HSPs)
chr5 (75-265)||(41455250-41455445)
chr5 (77-252)||(28224388-28224564)
chr5 (77-265)||(33793015-33793198)
chr5 (75-254)||(42920566-42920744)
chr5 (75-178)||(6633680-6633783)
chr5 (75-261)||(22553734-22553923)
chr5 (77-243)||(25495471-25495641)
chr5 (91-265)||(2423201-2423375)
chr5 (75-264)||(2802504-2802690)
chr5 (77-265)||(5175152-5175334)
chr5 (75-183)||(38147488-38147596)
chr5 (76-252)||(18432467-18432648)
chr5 (75-265)||(36568091-36568278)
chr5 (73-242)||(2589370-2589538)
chr5 (75-264)||(2796343-2796529)
chr5 (90-267)||(4414612-4414793)
chr5 (104-254)||(22747119-22747269)
chr5 (78-183)||(34880918-34881023)
chr5 (78-252)||(19402614-19402792)
chr5 (75-263)||(23418345-23418528)
chr5 (136-245)||(6595370-6595479)
chr5 (106-250)||(23623410-23623559)
chr5 (82-183)||(39730638-39730738)
chr5 (75-147)||(10090606-10090678)
chr5 (361-413)||(29411600-29411652)
chr5 (75-163)||(41805442-41805530)
chr5 (75-182)||(11402974-11403081)
chr5 (77-257)||(40331004-40331185)
chr5 (40-82)||(36568029-36568071)
chr5 (92-176)||(7591087-7591169)
chr5 (77-122)||(8541986-8542030)
chr5 (78-182)||(34111381-34111483)
chr5 (90-182)||(39052948-39053040)
chr5 (170-257)||(691129-691216)
chr5 (190-265)||(42920086-42920161)
chr5 (148-182)||(34087813-34087847)
chr5 (215-257)||(42119337-42119379)
chr5 (165-237)||(17131651-17131723)
chr5 (165-237)||(32243946-32244018)
chr5 (110-182)||(40692857-40692928)
[»] chr6 (22 HSPs)
chr6 (75-257)||(9686425-9686607)
chr6 (77-258)||(7169608-7169785)
chr6 (78-257)||(29048925-29049094)
chr6 (75-183)||(13092373-13092481)
chr6 (77-265)||(22414188-22414372)
chr6 (78-182)||(24644556-24644658)
chr6 (75-266)||(19134619-19134809)
chr6 (75-237)||(31944996-31945162)
chr6 (77-243)||(13531810-13531976)
chr6 (75-182)||(12108179-12108285)
chr6 (81-266)||(4577474-4577654)
chr6 (73-252)||(8064863-8065047)
chr6 (83-177)||(6400211-6400306)
chr6 (75-179)||(891945-892049)
chr6 (73-126)||(16971410-16971463)
chr6 (137-265)||(16970298-16970420)
chr6 (77-128)||(4563242-4563293)
chr6 (97-235)||(14564822-14564958)
chr6 (97-243)||(30752968-30753109)
chr6 (75-147)||(32190317-32190389)
chr6 (143-266)||(15837209-15837327)
chr6 (174-236)||(6267474-6267536)
[»] chr7 (43 HSPs)
chr7 (77-253)||(27100131-27100307)
chr7 (77-253)||(27177996-27178172)
chr7 (75-265)||(1812856-1813046)
chr7 (77-252)||(40849237-40849417)
chr7 (75-242)||(20334969-20335136)
chr7 (72-265)||(8568061-8568258)
chr7 (77-267)||(11833981-11834167)
chr7 (75-209)||(27456704-27456838)
chr7 (75-183)||(6879695-6879803)
chr7 (75-183)||(7697668-7697781)
chr7 (75-258)||(31287295-31287483)
chr7 (75-243)||(43202791-43202954)
chr7 (75-252)||(524392-524574)
chr7 (77-265)||(26208806-26208992)
chr7 (91-252)||(46147602-46147763)
chr7 (77-183)||(35495786-35495892)
chr7 (90-249)||(29211155-29211308)
chr7 (77-242)||(2734704-2734866)
chr7 (75-252)||(22298908-22299089)
chr7 (77-181)||(25007640-25007742)
chr7 (90-202)||(34751383-34751494)
chr7 (75-177)||(48643163-48643264)
chr7 (110-263)||(31011278-31011431)
chr7 (75-254)||(47646293-47646467)
chr7 (91-252)||(29628606-29628772)
chr7 (79-252)||(11399502-11399680)
chr7 (101-168)||(23675771-23675838)
chr7 (75-178)||(38879489-38879592)
chr7 (73-183)||(8117880-8117989)
chr7 (143-237)||(16496857-16496951)
chr7 (132-252)||(20482808-20482928)
chr7 (75-222)||(30855472-30855621)
chr7 (82-237)||(22700880-22701039)
chr7 (98-183)||(38903223-38903310)
chr7 (139-264)||(10338044-10338181)
chr7 (75-146)||(16535383-16535454)
chr7 (75-146)||(16630208-16630279)
chr7 (75-182)||(23033057-23033163)
chr7 (91-252)||(26956234-26956390)
chr7 (118-183)||(30079189-30079254)
chr7 (77-147)||(10338435-10338505)
chr7 (165-237)||(35819645-35819717)
chr7 (131-183)||(37376192-37376244)
[»] chr8 (26 HSPs)
chr8 (75-183)||(1271510-1271618)
chr8 (110-267)||(4785641-4785793)
chr8 (77-265)||(24681598-24681791)
chr8 (74-183)||(22810786-22810895)
chr8 (74-173)||(12193070-12193169)
chr8 (74-173)||(12437498-12437597)
chr8 (75-237)||(13325678-13325836)
chr8 (90-183)||(3155622-3155715)
chr8 (77-236)||(15452210-15452370)
chr8 (75-265)||(12659781-12659975)
chr8 (73-183)||(28441844-28441954)
chr8 (170-265)||(11219442-11219537)
chr8 (75-182)||(27674896-27675003)
chr8 (75-158)||(44024553-44024636)
chr8 (80-174)||(30942942-30943036)
chr8 (74-157)||(28801949-28802032)
chr8 (102-183)||(3129266-3129347)
chr8 (75-148)||(12073853-12073926)
chr8 (75-252)||(9012363-9012541)
chr8 (77-126)||(11219335-11219384)
chr8 (73-182)||(40436812-40436921)
chr8 (154-265)||(31477724-31477835)
chr8 (215-265)||(3155551-3155601)
chr8 (75-129)||(41346287-41346341)
chr8 (40-81)||(4785554-4785595)
chr8 (165-237)||(36340320-36340392)
[»] chr2 (24 HSPs)
chr2 (100-265)||(12884775-12884946)
chr2 (77-265)||(12041112-12041295)
chr2 (77-265)||(5862176-5862361)
chr2 (91-252)||(1331385-1331545)
chr2 (75-237)||(15320139-15320296)
chr2 (77-238)||(29172064-29172222)
chr2 (75-183)||(13194281-13194387)
chr2 (75-267)||(36500135-36500334)
chr2 (155-254)||(11678441-11678540)
chr2 (155-258)||(11695919-11696022)
chr2 (99-252)||(27301026-27301174)
chr2 (75-243)||(41166531-41166704)
chr2 (73-224)||(44085864-44086020)
chr2 (75-209)||(11050977-11051112)
chr2 (78-163)||(22014339-22014424)
chr2 (75-183)||(31719677-31719786)
chr2 (103-263)||(11377175-11377335)
chr2 (77-244)||(27898712-27898878)
chr2 (75-182)||(10242349-10242456)
chr2 (133-237)||(27962225-27962333)
chr2 (78-118)||(11678377-11678417)
chr2 (78-118)||(11695855-11695895)
chr2 (75-183)||(12841719-12841827)
chr2 (77-125)||(1536964-1537012)
[»] scaffold0204 (2 HSPs)
scaffold0204 (75-265)||(26242-26432)
scaffold0204 (75-236)||(14901-15062)
[»] scaffold0664 (1 HSPs)
scaffold0664 (75-163)||(6358-6446)
[»] scaffold0688 (4 HSPs)
scaffold0688 (75-227)||(1550-1712)
scaffold0688 (78-183)||(3146-3256)
scaffold0688 (75-114)||(8119-8158)
scaffold0688 (78-114)||(4813-4849)
[»] scaffold0001 (1 HSPs)
scaffold0001 (75-160)||(428022-428107)
[»] scaffold0210 (2 HSPs)
scaffold0210 (73-147)||(20266-20340)
scaffold0210 (73-147)||(28158-28232)
[»] scaffold0015 (1 HSPs)
scaffold0015 (165-237)||(62850-62922)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 74 - 263
Target Start/End: Complemental strand, 6693810 - 6693621
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6693810 aagagaaaaaatgtcattttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcggttt 6693711  T
Q  174 ggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaat 263  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  6693710 ggtttggtttggttgataaaattaaaaccacaaacctaaccaaaccatgcgattgagtaaaaaattgatctgaatacatccgaacaaaat 6693621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 6248453 - 6248612
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||||||||| |||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6248453 aaaaatatgtcattttattaaagtttccattgaatttctatgagtattggtctaagtgatatatatttaattagtgtttttcttatattgcggtttggtt 6248552  T
Q  178 tggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||||  |||| |||||| |||||| |||||| ||| |||||||||| ||| ||||||||    
T  6248553 tggttcggttggtaaaatcaaaaccgcaaaccgaaccaaaccatgcggttgggtaaaaaa 6248612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 26344754 - 26344569
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||| |||||    
T  26344754 agaaaaaatatgtcattttattaaagttctcatttagtttctatgagtattggtccaaacgatatatattcaattagtgtatttcttatattgcggtttg 26344655  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||| ||||     | |||||| |||||  |||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  26344654 gttcggtt-----ggtaaaatcaaaactgcaaaccgaaccaaaccatgcggttgagtaaaaaattgatccgaatacatccgaaccaaatgc 26344569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 73 - 266
Target Start/End: Complemental strand, 25559727 - 25559532
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctat--gagtattggtccaagtgatatatatttaattagtgtttttcttatattgcag 170  Q
    ||||| |||||||||| ||||||| || ||  ||||||||||||||  ||||||||||  || ||||||||||||||||| ||||||||||||||||| |    
T  25559727 aaagataaaatatgtcattttattcaaattcccattgagtttctatacgagtattggtataaatgatatatatttaattattgtttttcttatattgcgg 25559628  T
Q  171 tttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgca 266  Q
    |||| |||||||| |||| |||||| ||||||||||||| ||| ||||||| || |||||||||||| |||||| |||| || ||||| |||||||    
T  25559627 tttgatttggtttggttggtaaaatcaaaaccacaaaccgaaccaaaccatacggttgagtaaaaaaatgatccgaatatatccgaaccaaatgca 25559532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 76 - 264
Target Start/End: Original strand, 35375545 - 35375734
Alignment:
Q  76 gaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattg-cagtttg 174  Q
    ||||||||||||| |||||| ||||||| |||||||||||||| |||||||||| |  ||  |||| |||||||| |||||||||||| ||| |||||||    
T  35375545 gaaaaaatatgtcattttataaaagtttccattgagtttctataagtattggtcaagatggcatatgtttaattaatgtttttcttatgttggcagtttg 35375644  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatg 264  Q
    ||||||||  |||| |||||| |||||| |||||| ||| |||||||||| |||||||||||| |||||  ||||||||||||| |||||    
T  35375645 gtttggttaggttggtaaaataaaaaccgcaaaccaaacaaaaccatgcggttgagtaaaaaaatgatctgaatacattcgaaccaaatg 35375734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 333 - 429
Target Start/End: Complemental strand, 6693551 - 6693455
Alignment:
Q  333 aacatccgtaccttaccacacattatgtaattgacaaactagaagaaatatctcattgcaatacttaatttcgtggcctagctctatatttattact 429  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6693551 aacatccctaccttaccacagattatgtaattgacaaactagaagaaatatctcattgcaatacttaatttcgtggcctaactctatatttattact 6693455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 40094872 - 40094770
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||    
T  40094872 agaaataatatgtcattttattaaagttttcattgagtttctatgagtattggttcaagtgatatatatttaattagtgtttttcttatattgtggtttg 40094773  T
Q  175 gtt 177  Q
    |||    
T  40094772 gtt 40094770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 27507218 - 27507023
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||| ||||| ||||| ||||||||  ||||| ||||||||||||| | || |  ||||||||||||||||||||||||||||||||||| |||||    
T  27507218 agaaaaaaaatgtcattttactaaagtttcaattgaatttctatgagtatcgatctagatgatatatatttaattagtgtttttcttatattgcggtttg 27507119  T
Q  175 gtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||      |||| |||||| |||||| |||||| ||| ||| |||||| |||||||||||| |||||| ||||||| ||||| ||||||    
T  27507118 gtttggtttggttcagttggtaaaatcaaaaccgcaaaccgaaccaaagcatgcggttgagtaaaaaaatgatccgaatacatccgaaccaaatgc 27507023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 75 - 263
Target Start/End: Original strand, 50471475 - 50471656
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| | |||||||||||||| || ||||||||||||||||||     |    
T  50471475 agaaaaaatgtgtcattttattaaagttaccattgagtttctatgagtattggtctaggtgatatatatttatttcgtgtttttcttatattgc-----g 50471569  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaat 263  Q
    |||| |||| ||||||||||| |||||| |||||| ||| |||||||||  ||||||| |||  |||||| |||||||| |||| ||||    
T  50471570 gtttagtttagttgataaaatcaaaaccgcaaaccgaaccaaaccatgcagttgagtagaaa--tgatccgaatacatttgaaccaaat 50471656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 73 - 258
Target Start/End: Original strand, 12973942 - 12974134
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtg--tttttcttatattgcag 170  Q
    |||| ||||||||||| |||||||||||||| ||||  | ||||||||||||| |||||||||||||||||||||||||||  ||||  ||||||||| |    
T  12973942 aaaggaaaaatatgtcattttattaaagtttccattaggattctatgagtattagtccaagtgatatatatttaattagtgatttttatttatattgcgg 12974041  T
Q  171 tttggtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaac 258  Q
    |||||||||||||      |||| |||||| |||||  |||||| ||| ||||||||   ||||||||||||||||||  |||||||||||||    
T  12974042 tttggtttggtttggttcggttggtaaaatcaaaacagcaaaccgaaccaaaccatgttgttgagtaaaaaattgatctgaatacattcgaac 12974134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 26063912 - 26063752
Alignment:
Q  81 aatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg----gt 176  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||| |||||    ||    
T  26063912 aatatgttattttattaaagttttcattgagtttctatgagtattgctctaggtgatatatatttaattaatgtttttcttatattgcggtttggtttgt 26063813  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    ||||||  |||| |||||| |||||  |||||| ||| |||||||| | || |||||||||    
T  26063812 ttggttcggttggtaaaatcaaaactccaaaccgaaccaaaccatgtggtttagtaaaaaa 26063752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 78 - 252
Target Start/End: Original strand, 3937140 - 3937308
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||| ||||| ||| ||||||||||| ||||| |||||||||||||||||  || ||||||| ||||||||||||||||| ||||||||||||||||||    
T  3937140 aaaaaaatgtcatttaattaaagtttttattgaatttctatgagtattggtataaatgatatacatttaattagtgttttt-ttatattgcagtttggtt 3937238  T
Q  178 tggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    ||||| |     |||||| |||||| |||||| ||| |||||||| | ||| |||||||| | ||||||||||||    
T  3937239 tggttgc-----taaaatcaaaaccgcaaaccgaaccaaaccatgtggttgggtaaaaaaattatccaaatacat 3937308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 18310343 - 18310536
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||| ||||| |||||| |||||||||||||| ||||||| |||||||||  || ||| |||| |||||||||||| ||||| || |||| |||||    
T  18310343 agaaaaaacatgtcattttataaaagttttcattgaatttctataagtattggtttaaatgacatatgtttaattagtgtatttctaatgttgcggtttg 18310442  T
Q  175 gtttggtttcg-----ttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||||||| |     |||||||||| |||||||| |||| ||| |||||||| | |||||| ||||| ||||||  |||||| ||||| ||||||    
T  18310443 gtttggtttggttcgtttgataaaataaaaaccactaaccaaaccaaaccatgtggttgagtcaaaaaatgatcc--atacatccgaaccaaatgc 18310536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 18834267 - 18834163
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| |||||||||| | |||| |||||||||||||||||||||||||| |||  |||||    
T  18834267 agaaaaaatatgtcattttataaaagttttcattgagtttttattagtattggtctaggtgacatatatttaattagtgtttttcttatgttgtggtttg 18834168  T
Q  175 gtttg 179  Q
    |||||    
T  18834167 gtttg 18834163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 52380440 - 52380330
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatat--atatttaattagtgtttttcttatattgcagtt 172  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||| | |||||||  ||||||||||||||||||||||||||||  |||    
T  52380440 agaaaaaatatgtcattttattaaagtttttattgaatttctataagtattggtctaggtgatatatatatttaattagtgtttttcttatattggggtt 52380341  T
Q  173 tggtttggttt 183  Q
    | |||||||||    
T  52380340 tagtttggttt 52380330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 6693897 - 6693828
Alignment:
Q  13 attcttaaccttaaaacaaacaccccataagagttcaagtagtaaataaatacaattttgaaagaaaaaa 82  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6693897 attcttaaccttgaaacaaacaccccataagagttcaagtagtacataaatacaattttgaaagaaaaaa 6693828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 9330773 - 9330882
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| | |||| |||| |||||||| |||||||||||| ||||  ||    
T  9330773 aaagaaaaaatatatcattttataaaagttttcattgagtttctatgagtattggtctaggtgacatatgtttaattaatgtttttcttatgttgcgatt 9330872  T
Q  173 tggtttggtt 182  Q
    || |||||||    
T  9330873 tgatttggtt 9330882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 35979980 - 35979817
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||| || ||||||| ||||||||||||||||||||| ||| | |||| ||| |||||||||||||||||||||| |||| |||||    
T  35979980 agaaaaaatatgtcattt-ataaaagtttccattgagtttctatgagtatttgtctaggtgacatagatttaattagtgtttttcttatgttgcggtttg 35979882  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatcc 244  Q
    |||||     |||| |||||  |||||| |||||| ||| |||||||||  ||||| |||||| ||||||    
T  35979881 gtttg-----gttggtaaaaagaaaaccgcaaaccaaaccaaaccatgctgttgaggaaaaaagtgatcc 35979817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 36203155 - 36202959
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata-tttaattagtgtttttcttatattgcagttt 173  Q
    |||| ||||||||| |||||| ||||||| |||||||||||||| |||||||||| | |||| ||| | |||||||||||||||| |||| |||| ||||    
T  36203155 agaacaaatatgtcattttataaaagtttccattgagtttctattagtattggtctaggtgacatagattttaattagtgtttttattatgttgcggttt 36203056  T
Q  174 ggtttggt----ttc-gttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||||||    ||| |||| |||||| ||| || |||||| ||| |||||||||| |||||||||||  ||| || ||||||| | ||| ||||||    
T  36203055 ggtttggtatggttcggttggtaaaatgaaagccgcaaaccaaaccaaaccatgcggttgagtaaaaatgtgaaccgaatacatccaaaccaaatgc 36202959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 44056110 - 44056305
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt- 173  Q
    ||||||||||| || |||||| |||   |||||||||||| |||||||||||||| |||||| |||| |||||| | | |||||||||| |||||||||     
T  44056110 agaaaaaatatatcattttataaaaaaattcattgagtttatatgagtattggtctaagtgacatatgtttaatcaatatttttcttatgttgcagtttg 44056209  T
Q  174 ----ggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
        |||||||||  |||| |||||| |||||| ||||| |||| |||||||||| |||||||| ||| ||| || | ||||||| ||| ||||||    
T  44056210 gtttggtttggttcagttggtaaaatgaaaaccgcaaacataaccaaaccatgcggttgagtaagaaaatgacccgattacattcaaaccaaatgc 44056305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 35992303 - 35992130
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||| || ||||||| |||| ||||||| |||||||| ||| | |||| ||| |||||||||||||| ||||||| ||||||||||    
T  35992303 agaaaaaatatgtcattt-ataaaagtttccattaagtttctttgagtatttgtctaggtgacatagatttaattagtgttcttcttatgttgcagtttg 35992205  T
Q  175 gtttggtttcgtt-----gataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatcc 244  Q
    ||||||||| |||     | |||||  |||||  |||||| ||| |||||||||||||||| |||||| ||||||    
T  35992204 gtttggtttggtttggttggtaaaaagaaaactgcaaaccaaaccaaaccatgcgattgaggaaaaaagtgatcc 35992130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 32910065 - 32909881
Alignment:
Q  86 gtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggt---- 181  Q
    |||||||||| |||||||||||| ||||||||||| ||||| || | |||| |||||||||||||   |||||||||| |||| |||||||||| |        
T  32910065 gtcgttttataaaagttttcattaagtttctatgattattgatctaggtgagatatatttaattaacatttttcttatgttgcggtttggtttgattctg 32909966  T
Q  182 ttcg-ttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||| ||| |||||| ||||||||||||| ||| |||||||||| ||||  |||||| |||||  | ||||| ||||| ||||||    
T  32909965 ttcgattggtaaaatgaaaaccacaaaccaaaccaaaccatgcggttgaacaaaaaaatgatcttattacatccgaaccaaatgc 32909881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 266
Target Start/End: Original strand, 382448 - 382627
Alignment:
Q  91 tttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgca-----gtttggtttggtttcg 185  Q
    ||||| || ||||||||||||||| |||||  ||||||| |||||| ||| |||||||||||||||||||||| |||||     | ||| |||||||| |    
T  382448 tttataaatgttttcattgagtttttatgatcattggtctaagtgacatagatttaattagtgtttttcttatgttgcaagttggattgatttggtttgg 382547  T
Q  186 ttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgca 266  Q
     || |||||| |||||| |||||| ||| ||||||||| ||| | ||||||| ||||||| ||| |||| ||| |||||||    
T  382548 ctggtaaaataaaaaccgcaaaccgaaccaaaccatgcaattaaataaaaaa-tgatccagataaattcaaaccaaatgca 382627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 25507257 - 25507411
Alignment:
Q  79 aaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggttt 178  Q
    |||| ||||| |||||| |||||||||||||||||||||||| ||||||   | | || ||||||||||||||| |||||||||| |||     ||||||    
T  25507257 aaaaaatgtcattttataaaagttttcattgagtttctatgaatattggattatgagacatatatttaattagtttttttcttatgttg-----tggttt 25507351  T
Q  179 ggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaat 238  Q
    ||||| |||| |||||| |||||| |||||| ||| |||   |||| |||||||||||||    
T  25507352 ggtttggttggtaaaataaaaaccgcaaaccaaaccaaattgtgcggttgagtaaaaaat 25507411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 39158014 - 39157820
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtatt-ggtccaagtgatatatatttaattagtgtttttcttatattgcag----- 170  Q
    |||||||||||| |||||| |||||| ||||||||  | | ||||| || |||  | |||| | || |||||||||||||| |||||| |||| |         
T  39158014 aaaaaatatgtcattttataaaagttatcattgaggctatgtgagtgtttggtttaggtgacaaatgtttaattagtgtttatcttatgttgcggtttga 39157915  T
Q  171 tttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||||||||||  ||||||||||| ||||||||||||| |||||||| || |  |||||||| ||| |||||||||||||| ||||| ||||||    
T  39157914 tttggtttggttcggttgataaaataaaaaccacaaaccaaactaaactatacagttgagtaagaaagtgatccaaatacatccgaaccaaatgc 39157820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 17989423 - 17989588
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| | ||| |||||| ||||||| ||||||||||||||| ||||||||| | |||| ||| |||||||||  ||||||||||| |||| || ||||    
T  17989423 aaaaaaaaagtcattttataaaagtttccattgagtttctatgtgtattggtctaggtgacatagatttaattaaagtttttcttatgttgcggtctggt 17989522  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
     |||||| |||  |||||| || |||  ||||| ||| |||| ||| | |||||||||||| ||||    
T  17989523 atggtttggttcgtaaaatgaataccgtaaaccaaaccaaactatgtggttgagtaaaaaagtgat 17989588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 21685256 - 21685088
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||| |||||| ||||| |  ||||||||||||| |||||||||| | |||| |||| |||||||| ||||||||||||      || ||||    
T  21685256 aaaaaatatgtcattttataaaagtgtctattgagtttctataagtattggtctaggtgacatatgtttaattaatgtttttcttat-----ggtgtggt 21685162  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatac 250  Q
    ||||| | |||| |||||| |||||  |||||   || |||||||||  |||||||||||| ||||||||||||    
T  21685161 ttggtctagttggtaaaataaaaactgcaaacaataccaaaccatgcatttgagtaaaaaaatgatccaaatac 21685088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 36782076 - 36782004
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaa 147  Q
    |||||||||||||  |||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||    
T  36782076 agaaaaaatatgtaattttattaaagtttccattgagtttctataagtattgatcaaagtgatatatatttaa 36782004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 8269020 - 8269130
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    |||||||| ||||||| |||||| ||||||| |||||||||| ||| | |||||||| |  ||||||||||||||||| |||||||||| | |||| |||    
T  8269020 aaagaaaatatatgtcattttataaaagtttccattgagtttatataaatattggtctagatgatatatatttaattaatgtttttcttgtgttgcggtt 8269119  T
Q  173 tggtttggttt 183  Q
    |  ||||||||    
T  8269120 ttatttggttt 8269130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 16063196 - 16063350
Alignment:
Q  84 atgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgttt-ttcttatattgcagtttggtttggtt 182  Q
    ||||| ||||||||||||||  ||||| |||||||||||||||||  |  | | ||||||||||||| ||||| || || ||||||  ||||||||||||    
T  16063196 atgtcattttattaaagtttcgattgaatttctatgagtattggtttagattaaatatatttaattaatgtttctttttttattgcgatttggtttggtt 16063295  T
Q  183 tcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
      |||| |||||| |||||| |||||  ||| ||| |||||| ||||||||||||    
T  16063296 gggttggtaaaatcaaaaccgcaaactgaaccaaatcatgcggttgagtaaaaaa 16063350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 11073075 - 11072882
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| ||||| |||||| |||||||| ||||||||||||| |||||||||  | |||| |||| |||| |||   |||||||||| |||| |||||||    
T  11073075 aaaaaaaatgtcattttataaaagtttttattgagtttctataagtattggtttaggtgagatatgtttatttaacatttttcttatgttgcggtttggt 11072976  T
Q  177 ttggt----ttc-gttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||    | | |||| |||||| |||||| |||||| | | |||||||||| ||||| || ||| |||||| | ||||| ||||| ||||||    
T  11072975 ttggtgcggtgcggttggtaaaatgaaaacctcaaaccaagccaaaccatgcggttgagcaagaaaatgatccgattacatccgaaccaaatgc 11072882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 10847218 - 10847072
Alignment:
Q  90 ttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttga 189  Q
    |||||| ||||||  ||||||||| |||| |||||| ||| |  ||| ||||| |||| || |||||||||||| |||| |||||||||||||  | ||     
T  10847218 ttttataaaagttcccattgagttgctattagtatttgtctatatgacatataattaagtattgtttttcttatgttgcggtttggtttggttgggctgg 10847119  T
Q  190 taaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaa 236  Q
    |||||| |||||||||||   ||| ||| |||||| |||||||||||    
T  10847118 taaaataaaaaccacaaattaaaccaaatcatgcggttgagtaaaaa 10847072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 9961921 - 9961760
Alignment:
Q  99 agttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaa 198  Q
    ||||| ||||||||||||||||||||||||| | |||| ||| ||||||||| | ||||| ||||  ||| |||||| |||| ||||    |||||| ||    
T  9961921 agtttccattgagtttctatgagtattggtctaggtgacataaatttaattaattttttttttatgatgcggtttggcttgg-ttcg----taaaatgaa 9961827  T
Q  199 aaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||  |||| | ||| ||| |||||| |||||||||||| |||||| ||||||| | ||| ||||||    
T  9961826 aacagcaaatcaaaccaaatcatgcggttgagtaaaaaagtgatccgaatacatccaaaccaaatgc 9961760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 24630424 - 24630502
Alignment:
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattc 254  Q
    |||||||  |||||| |||| |||||| |||||  ||| |||||||||| |||||||||||| ||||||||||||||||    
T  24630424 tttggttcagttgatgaaataaaaaccgcaaactgaaccaaaccatgcggttgagtaaaaaagtgatccaaatacattc 24630502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 34721422 - 34721286
Alignment:
Q  111 gtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacct 210  Q
    |||||||||||| |||||  | |||| ||| ||||| ||| |||||||||||| |||||| || |||||| |     | |||||| |||||| |||||      
T  34721422 gtttctatgagtgttggtttaggtgacataaatttagttaatgtttttcttatgttgcagattagtttggct-----ggtaaaataaaaaccgcaaactg 34721328  T
Q  211 aactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||||||||  |||| ||||||| ||||||||||||||    
T  34721327 aactaaaccatgcagttgaataaaaaagtgatccaaatacat 34721286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 8165241 - 8165142
Alignment:
Q  84 atgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    ||||| |||||| |||  ||||||||||||| ||||||||||| || | |||| |||| ||||||||   ||||| |||| |||| ||||||||||||||    
T  8165241 atgtcattttataaaaaatttcattgagtttatatgagtattgatctaggtgacatatgtttaattaacatttttattatgttgcggtttggtttggttt 8165142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 17652204 - 17652286
Alignment:
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||||||||  |||| |||||| |||||| |||| | ||| |||||||||| ||||| |||||| |||||| |||||||    
T  17652204 gtttggtttggttcggttggtaaaatgaaaaccccaaatcaaacaaaaccatgcggttgaggaaaaaagtgatccgaatacat 17652286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 13056239 - 13056162
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgt 154  Q
    |||||||||||| || ||| |||||| ||| |||||||||||||||||| ||| | |||| |||  ||||||||||||    
T  13056239 aaaaaatatgtcattctataaaagttatcactgagtttctatgagtattagtctaggtgacataagtttaattagtgt 13056162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 15881899 - 15881716
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttca-ttgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttgg 175  Q
    |||||| | ||| |||||| ||||||| || |||| |||| |||||||||| |  | |||| |||||||||||||||||||||||||| ||||     ||    
T  15881899 aaaaaaaaagtcattttataaaagtttccaattgactttcaatgagtattgatgtaggtga-atatatttaattagtgtttttcttatgttgc-----gg 15881806  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||| ||  ||||  || || ||||||||||  | ||| ||||||||   |||||||||||  ||||||||||||||| |||| ||||||    
T  15881805 tttgattaagttggaaatataaaaaccacaattcgaaccaaaccatgtagttgagtaaaaatatgatccaaatacatttgaaccaaatgc 15881716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 16537526 - 16537445
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgttttt 158  Q
    |||||||||||| |||||  |||||||||||||| |||||| ||||||||||| |  |   |||| ||||||||||||||||    
T  16537526 aaaaaatatgtcattttacaaaagttttcattgactttctacgagtattggtctacattgcatatgtttaattagtgttttt 16537445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 17652166 - 17652207
Alignment:
Q  142 atttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  17652166 atttaattagtgtttttcttatgttgcggtttggtttggttt 17652207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 32937133 - 32937048
Alignment:
Q  98 aagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    |||||||  |||||||| |||||||||||||| | |||| | || |||||||| |||||||||||| |||| |||| |||| ||||    
T  32937133 aagtttttgttgagtttatatgagtattggtctaggtgacacatgtttaattaatgtttttcttatgttgcggttttgttttgttt 32937048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 23474809 - 23474754
Alignment:
Q  75 agaaaaaatatgtcgttttattaaa-gttttcattgagtttctatgagtattggtc 129  Q
    |||||||||||||| |||||| ||| |||| |||||| ||||||||||||||||||    
T  23474809 agaaaaaatatgtcattttataaaaagtttccattgaatttctatgagtattggtc 23474754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 45949141 - 45949062
Alignment:
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaata 249  Q
    |||||||||||||  |||| |||||| |||||| |||| | ||| | |||||||  |||||| |||||||||||||||||    
T  45949141 gtttggtttggttcggttggtaaaataaaaaccgcaaatcaaaccataccatgcagttgagtcaaaaattgatccaaata 45949062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 44828276 - 44828433
Alignment:
Q  76 gaaaaaatatgtcgttttattaaagtttt-cattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||| ||||  |||||| |||||||| |||| | ||| |||||||||  ||| | |||| ||| || ||||||||||||||  |||  ||| |||||    
T  44828276 gaaaaaaaatgttattttataaaagtttttcatttaatttttatgagtatcagtctatgtgacatagatataattagtgttttttctatgatgcggtttg 44828375  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    ||||| |||  ||| |||||| ||||| |||||||     ||||||||||||||| |||||||    
T  44828376 gtttgatttgattggtaaaataaaaactacaaacc-----aaaccatgcgattgaataaaaaa 44828433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 25559788 - 25559747
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaaaa 81  Q
    ||||||||||||||||| ||||||||| |||||||| |||||    
T  25559788 taagagttcaagtagtagataaatacatttttgaaataaaaa 25559747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 27455642 - 27455575
Alignment:
Q  115 ctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    ||||||||||||| | |  ||| ||| |||||||||||| ||||||||| |||||||||| ||||||||    
T  27455642 ctatgagtattggactatatgacataaatttaattagtg-ttttcttatgttgcagtttgatttggttt 27455575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 29233127 - 29233303
Alignment:
Q  76 gaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttgg 175  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||  |||| |    
T  29233127 gaaaaaatatgtcattttattaaagttttcattgagtttctatgagtattgatccatgtaatatatatttaattagtgtttttcttatattggggttttg 29233226  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||  |||| |||||||||||||||||||| ||| |||||||||| ||||| | ||||||||||| |||||||    
T  29233227 tttggttcggttggtaaaattaaaaccacaaaccgaaccaaaccatgcggttgagaagaaaattgatccgaatacat 29233303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 20986776 - 20986971
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20986776 agaaaaaatatgtcattttattaaagtttctattgagtttatatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcggtttg 20986875  T
Q  175 gtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||      |||  |||||| |||| | |||||| ||| |||| ||||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  20986876 gtttggtttggttcggttagtaaaatcaaaatcccaaaccaaaccaaacaatgcggttgagtaaaaaattgatccgaatacatccgaaccaaatgc 20986971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 73 - 267
Target Start/End: Original strand, 41325770 - 41325969
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    |||||||||||||||| |||||||||||||| |||||||||| |  ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||    
T  41325770 aaagaaaaaatatgtcattttattaaagtttccattgagtttattcgagtattggtcaaagtgatatatatctaattagtgtttttcttatattgcggtt 41325869  T
Q  173 tggtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgcaa 267  Q
    |||||||||||      |||| |||||| |||||  |||||| ||| |||||||||  ||||||||| ||||||||||||||||| ||||  ||||||||    
T  41325870 tggtttggtttggttcggttggtaaaatcaaaactgcaaaccgaaccaaaccatgcagttgagtaaataattgatccaaatacatccgaatcaaatgcaa 41325969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 21069437 - 21069629
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||| ||||||| ||||||||||||||||||| ||||| || ||||||||||  |||||| |||||||||||||||||||||||||||| || |||||||    
T  21069437 aaaacatatgtcattttattaaagttttcattaagtttatacgagtattggtgtaagtgacatatatttaattagtgtttttcttatatcgcggtttggt 21069536  T
Q  177 ttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||      |||| |||||| |||| | |||||| ||| |||||||||| ||||||||||||||||||| ||||||| | ||| ||||||    
T  21069537 ttggtttggttcggttggtaaaatcaaaa-cgcaaaccgaacaaaaccatgcggttgagtaaaaaattgatccgaatacatccaaactaaatgc 21069629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 8485064 - 8485251
Alignment:
Q  84 atgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||| |   ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  8485064 atgtcattttattaaagtttacattgaatttctatgagtattggtctagaggatatatatttgattagtgtttttcttatattgcggtttggtttggttt 8485163  T
Q  184 -----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgca 266  Q
          |||| |||||| |||||| ||||||  || |||||||||| ||||||||| || |||| | ||||||| ||||  |||||||    
T  8485164 agttcggttggtaaaatcaaaaccgcaaaccggaccaaaccatgcggttgagtaaataaatgattcgaatacatccgaatcaaatgca 8485251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 1564764 - 1564660
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||| ||||| |||||||||||||||| |||| ||| |||||||||||||| |  ||||||||||||||||| ||||||||||||||||||||||||||    
T  1564764 aaaaaaatgtcattttattaaagttttc-ttgaatttatatgagtattggtctagatgatatatatttaattattgtttttcttatattgcagtttggtt 1564666  T
Q  178 tggttt 183  Q
    ||||||    
T  1564665 tggttt 1564660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 46471803 - 46471986
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||| ||| |||||||||| ||| |||||||||| | |||| ||| |||||||||  ||||||||||| |||     ||    
T  46471803 agaaaaaatatgtcattttataaaaatttccattgagtttttataagtattggtctaggtgacata-atttaattaaagtttttcttatgttg-----tg 46471896  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatg 264  Q
    ||||||||| ||| ||||||| |||||| |||||| ||| ||| |||||| |||||||||||| |||||| ||||||| ||||| |||||    
T  46471897 gtttggtttggttcataaaatgaaaaccgcaaaccaaaccaaatcatgcggttgagtaaaaaagtgatccgaatacatccgaaccaaatg 46471986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 23625556 - 23625447
Alignment:
Q  135 gatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaa 234  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||| |||||| ||| |||| || || |||| ||||    
T  23625556 gatatatatttaattagtgtttttcttatattgcggtttggtttggtttggttggtaaaatcaaaaccgcaaaccaaaccaaactatacggttgaataaa 23625457  T
Q  235 aaattgatcc 244  Q
    ||| ||||||    
T  23625456 aaaatgatcc 23625447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 92 - 265
Target Start/End: Original strand, 28148158 - 28148336
Alignment:
Q  92 ttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg-----gtttggtttcgt 186  Q
    |||||||||||  |||||| ||| |||||||||||||| |  || ||| ||||||||||||||||||||||||||||||||||     ||||||||  ||    
T  28148158 ttattaaagttcacattgaatttatatgagtattggtctagatggtatgtatttaattagtgtttttcttatattgcagtttgatttggtttggttcggt 28148257  T
Q  187 tgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |  |||||| |||||| |||||| ||| ||| |||||| ||| |||||||| |||||  ||||||| ||||| ||||||    
T  28148258 tagtaaaatcaaaaccgcaaaccgaacaaaatcatgcggttgcgtaaaaaaatgatctgaatacatccgaactaaatgc 28148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 41312378 - 41312209
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| || ||| |||||||  |||||||||||||||||| ||||| | |||||||| |||||||||  ||||||||||| |||| |||||    
T  41312378 agaaaaaatatgtcattctataaaagtttctattgagtttctatgagtactggtctaggtgatatagatttaattaaagtttttcttatgttgcggtttg 41312279  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaata 249  Q
    ||||| ||||     |||||| ||||||  ||||| ||   |||||| || |||||||||||| |||||||||||    
T  41312278 gtttgatttc-----taaaatgaaaaccgtaaaccaaatcgaaccatacggttgagtaaaaaagtgatccaaata 41312209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 79 - 266
Target Start/End: Original strand, 45464536 - 45464733
Alignment:
Q  79 aaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc---------- 168  Q
    |||| ||||| ||||||||||||||||||||| |||||||||||||||||  |  | ||||||||||||| ||| |||||||||||||||              
T  45464536 aaaaaatgtcattttattaaagttttcattgaatttctatgagtattggtttagattatatatatttaatcagtatttttcttatattgcggtttgattt 45464635  T
Q  169 agtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgca 266  Q
     |||||||||||||  ||||||||||| ||||||  |||   ||| |||||||| |||||||||||||| ||||||||||| ||  |||| |||||||    
T  45464636 ggtttggtttggttcggttgataaaatcaaaaccgtaaattgaaccaaaccatgtgattgagtaaaaaagtgatccaaatatatctgaaccaaatgca 45464733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 3666775 - 3666668
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| || |||||| |||||||||||||||||||||||| |||| ||| |||| | |||| |||||||| |||||||||||| |||| ||| |    
T  3666775 agaaaaaatatatcattttataaaagttttcattgagtttctatgaatattagtctaagttacatatgtttaattattgtttttcttatgttgcggttcg 3666676  T
Q  175 gtttggtt 182  Q
    ||||||||    
T  3666675 gtttggtt 3666668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 36106174 - 36105994
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||| |||||||| |||||||  |||||| ||||||||||||||||| | |||| ||| |||||||||| ||||||| ||| |||| |||||||    
T  36106174 aaaaaatatgccgttttataaaagtttcaattgagattctatgagtattggtctaggtgacatagatttaattagagtttttcctatgttgcggtttggt 36106075  T
Q  177 ttggt----ttc-gttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||    ||| |||| ||||||  ||||| |||| | ||  |||||||||| |||||||||||| |||||  |||||||    
T  36106074 ttggtctggttcggttggtaaaatggaaaccgcaaagcaaagcaaaccatgcggttgagtaaaaaagtgatctgaatacat 36105994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 48338720 - 48338910
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc-----a 169  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| | |||| |||      |||||  |||||||||| ||||          
T  48338720 agaaaaaatatgtcattttataaaagtttccattgagtttctatgagtattggtctaggtgacata-----gattagaatttttcttatgttgcggtttt 48338814  T
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||||||  |||| |||||| |||||| |||||| ||| |||||||||| ||||| |||||| |||||| ||||||| | ||| ||||||    
T  48338815 gtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatccaaactaaatgc 48338910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 4642839 - 4642932
Alignment:
Q  90 ttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    |||||||||||||| |||||  |||||||||||||||||| || || |||||||||||||||| |||||| |||||||| |||||| |||||||    
T  4642839 ttttattaaagtttccattgtatttctatgagtattggtctaaatggtatatatttaattagtatttttcatatattgcggtttggattggttt 4642932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 32223021 - 32222912
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata-tttaattagtgtttttcttatattgcagtt 172  Q
    ||||||||||||||| |||||| ||||||| |||||||||| ||||| |||||||  | |||| ||||| |||||||||||||||| |||| |||| |||    
T  32223021 aagaaaaaatatgtcattttataaaagtttacattgagtttatatgaatattggtataggtgacatatattttaattagtgtttttattatgttgcggtt 32222922  T
Q  173 tggtttggtt 182  Q
    ||||||||||    
T  32222921 tggtttggtt 32222912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 23449684 - 23449509
Alignment:
Q  81 aatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc-----agtttgg 175  Q
    ||||| || |||||||||||||| |||||| | || ||||||||||||| |  |||||| |||||||||| |||||||||||||||||       |||||    
T  23449684 aatatttcattttattaaagttt-cattgaatctcaatgagtattggtctagatgatatgtatttaattaatgtttttcttatattgcgatttgatttgg 23449586  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||  |||| |||||| |||||  |||||  ||| |||||||||| |||||||||||| |||||| |||||||    
T  23449585 tttggttcggttggtaaaatcaaaactgcaaactgaaccaaaccatgcggttgagtaaaaaaatgatccgaatacat 23449509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 48653553 - 48653415
Alignment:
Q  133 gtgatatatatttaattagtgttttt-cttatattgcagtttggtttggtttcgtt-----gataaaattaaaaccacaaacctaactaaaccatgcgat 226  Q
    |||| |||||||||||||| |||||| |||||||||| |||||||||||||| |||     || ||||| |||| |||||||| ||| |||||||||  |    
T  48653553 gtgacatatatttaattagcgttttttcttatattgcggtttggtttggtttggttcgattgacaaaatcaaaatcacaaaccgaaccaaaccatgcagt 48653454  T
Q  227 tgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||||||||| |||| ||||||||| ||||| ||||||    
T  48653453 tgagtaaaaaaatgattcaaatacatccgaaccaaatgc 48653415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 18319289 - 18319105
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||||||||| ||| || ||| ||| ||||||||||||||  ||||||||| |  ||| |||| |||||||| |||||||||||| |||  ||||||||    
T  18319289 aaaaatatgtcatttcataaaaatttccattgagtttctatttgtattggtctagatgacatatgtttaattaatgtttttcttatgttgttgtttggtt 18319190  T
Q  178 ----------tggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
              |||||| |||| |||||| |||||| |  ||| ||| |||||||| |||||||||||||||||||||||||||||    
T  18319189 aggtttgatttggtttggttggtaaaataaaaaccgcggaccaaaccaaaccatgagattgagtaaaaaattgatccaaatacat 18319105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 252
Target Start/End: Original strand, 18396700 - 18396884
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||||||||| ||| || ||| ||| ||||||||||||||  ||||||||| |  ||| |||| |||||||| |||||||||||| |||  ||||||||    
T  18396700 aaaaatatgtcatttcataaaaatttccattgagtttctatttgtattggtctagatgacatatgtttaattaatgtttttcttatgttgttgtttggtt 18396799  T
Q  178 ----------tggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
              |||||| |||| |||||| |||||| |  ||| ||| |||||||| |||||||||||||||||||||||||||||    
T  18396800 aggtttgatttggtttggttggtaaaataaaaaccgcggaccaaaccaaaccatgagattgagtaaaaaattgatccaaatacat 18396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 4689057 - 4689156
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| || ||||||  ||||||||||||||||| |||||||||| ||| | |||| |||  |||||||| |||||||||||| ||||||||||    
T  4689057 agaaaaaatatatcattttatagaagttttcattgagtttttatgagtatttgtctaggtgacataagtttaattattgtttttcttatgttgcagtttg 4689156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 25686123 - 25686025
Alignment:
Q  138 atatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||| ||||||||||||||||||||| |||||  |||||||||||| |||| |||||| |||||| |||||| ||| |||||||| | ||||||||||||    
T  25686123 atatgtttaattagtgtttttcttatgttgcaacttggtttggtttggttg-taaaataaaaaccgcaaaccaaaccaaaccatgtggttgagtaaaaaa 25686025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 41260485 - 41260652
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagtt-ttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    |||||||||||||| |||||| |||    ||||| ||||||||||||||||||||  |  ||| |||  ||||||||||||||||||||| |||||||||    
T  41260485 agaaaaaatatgtcattttataaaaaaaattcatggagtttctatgagtattggtttagatgacataagtttaattagtgtttttcttatgttgcagttt 41260584  T
Q  174 ggtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaa 236  Q
    ||||||||||      |||| |||||| |||||||||||   |||  ||||||||| |||||||||||    
T  41260585 ggtttggtttgattcggttggtaaaataaaaaccacaaattgaaccgaaccatgcggttgagtaaaaa 41260652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 251
Target Start/End: Original strand, 18399402 - 18399571
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||| ||| || ||||||| ||||||||||||||  |||||| || |  |||||||| |||||||||||||||||||||  ||     | ||    
T  18399402 aaaaaatatgtcatttcataaaagtttccattgagtttctatttgtattgttctagatgatatatgtttaattagtgtttttcttatgatg-----ttgt 18399496  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaataca 251  Q
    ||||||| |||| |||||| |||| | |||||| ||  ||||||||    ||||||||||| |||||||||||||    
T  18399497 ttggtttggttggtaaaataaaaaacgcaaaccaaagcaaaccatgttgctgagtaaaaaagtgatccaaataca 18399571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 35233000 - 35232895
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| ||||| ||||||  |||||||||||||||||||||| ||||| ||| | |||| |||  ||||||||||||||||||||| |||| |||| ||    
T  35233000 aaaaaaaatgtcattttatagaagttttcattgagtttctatgtgtatttgtctaggtgacataagtttaattagtgtttttcttatgttgcggtttagt 35232901  T
Q  177 ttggtt 182  Q
    | ||||    
T  35232900 tcggtt 35232895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 8312259 - 8312347
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttat 163  Q
    ||||||||| |||| |||||| ||| |||||||||||||||||||| |||||||| | |||| |||| |||||||| ||||| ||||||    
T  8312259 agaaaaaatttgtcattttataaaaattttcattgagtttctatgaatattggtctatgtgacatatgtttaattaatgtttatcttat 8312347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 49641220 - 49641367
Alignment:
Q  85 tgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttc 184  Q
    |||| |||||| ||| ||| ||| ||||||||||||||||| ||| | |||| ||| |||||||| || |||||||||| | |     |||||||||||     
T  49641220 tgtcattttataaaaatttccatggagtttctatgagtattagtctaggtgacataaatttaattggtatttttcttatgtcg-----tggtttggtttg 49641314  T
Q  185 gttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||| |||||| |||||| |||||| |||||||||| | | ||||||||||||    
T  49641315 gttggtaaaataaaaaccgcaaaccaaactaaaccacgtggttgagtaaaaaa 49641367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 18536366 - 18536183
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata-tttaattagtgtttttcttatattgcagttt 173  Q
    |||||||||||||| |||||| ||||||| |||| ||||| |||||||||||||| |  ||  ||| | |||||||||||||||| |||| |||| ||||    
T  18536366 agaaaaaatatgtcattttataaaagtttccatttagtttatatgagtattggtctagttggcataaattttaattagtgtttttattatgttgcggttt 18536267  T
Q  174 gg-----tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    ||     |||||||  |||  |||||| ||||| ||||||| ||  |||||||| | |||||||||||| | |||| |||||||    
T  18536266 ggtttgatttggttcggtttgtaaaatgaaaactacaaaccaaagcaaaccatgaggttgagtaaaaaagttatccgaatacat 18536183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 13715093 - 13715197
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||||||||  |||||| ||||||| |||| | ||  |||||||||||||  | |||| ||||||||||||||||||||  |||| |||| ||||||||    
T  13715093 aaaaatatgttattttataaaagtttccatttatttaatatgagtattggtatatgtgacatatatttaattagtgttttatttatgttgcggtttggtt 13715192  T
Q  178 tggtt 182  Q
    |||||    
T  13715193 tggtt 13715197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 48293069 - 48292941
Alignment:
Q  142 atttaattagtgtttttcttatattgcagtttggtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaa 236  Q
    |||||||||||||||||||||| |||| ||||||||||||||      || | |||||| |||||| |||||| ||| |||||||| | ||||| |||||    
T  48293069 atttaattagtgtttttcttatcttgcggtttggtttggtttgtttgggtaggtaaaatgaaaaccgcaaaccaaaccaaaccatgtggttgaggaaaaa 48292970  T
Q  237 attgatccaaatacattcgaacaaaatgc 265  Q
    | |||||| ||||||| | ||| ||||||    
T  48292969 agtgatccgaatacatccaaaccaaatgc 48292941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 14867143 - 14867218
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaatta 150  Q
    ||||| |||||||| ||||||  ||||||| ||| |||||||||||||||||||| | ||||||||| ||||||||    
T  14867143 agaaataatatgtcattttatagaagttttgattaagtttctatgagtattggtctaggtgatatatgtttaatta 14867218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 27743811 - 27743883
Alignment:
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
    |||||||||||||  |||| ||||||||||||| |||||| ||| || ||||||| |||||| ||||||||||    
T  27743811 gtttggtttggttcagttggtaaaattaaaaccgcaaaccaaaccaacccatgcggttgagtgaaaaattgat 27743883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 11031257 - 11031178
Alignment:
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattc 254  Q
    ||||||||  ||||||||||| |||||| |||||  ||| |||| ||| |||||||||||||| |||||| |||||||||    
T  11031257 gtttggttcagttgataaaatgaaaaccgcaaactgaaccaaactatgtgattgagtaaaaaagtgatccgaatacattc 11031178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 29701012 - 29701063
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggt 128  Q
    |||| ||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  29701012 aaaatatatgtcattttataaaagttttcattgagcttctatgagtattggt 29701063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 41325709 - 41325751
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaaaaa 82  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  41325709 taagagttcaagtagtacataaatacatttttgaaagaaaaaa 41325751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 265
Target Start/End: Original strand, 15724276 - 15724405
Alignment:
Q  136 atatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaa 235  Q
    |||||| ||||||||   |||||||||| |||| |||||||||||||  |||| |||||| ||||   |||||| ||| |||||||||| ||||| || |    
T  15724276 atatatgtttaattaacatttttcttatgttgcggtttggtttggttcggttggtaaaataaaaattgcaaaccaaaccaaaccatgcggttgagcaaga 15724375  T
Q  236 aattgatccaaatacattcgaacaaaatgc 265  Q
    || |||| | | ||||| ||||| ||||||    
T  15724376 aaatgatacgattacatccgaaccaaatgc 15724405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 27743514 - 27743555
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaaaa 81  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  27743514 taagagttcaagtagtacataaatacatttttgaaagaaaaa 27743555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 48685130 - 48685178
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtatt 125  Q
    |||||||||||| |||||| |||||| || |||||||||||||||||||    
T  48685130 aaaaaatatgtcattttataaaagttatcgttgagtttctatgagtatt 48685178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 7763805 - 7763762
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctat 118  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||    
T  7763805 agaaaaaaaatgtcattttataaaagttttcattgagtttctat 7763762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 17845384 - 17845419
Alignment:
Q  215 aaaccatgcgattgagtaaaaaattgatccaaatac 250  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17845384 aaaccatgcgattgagtaaaaaagtgatccaaatac 17845419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 45150613 - 45150530
Alignment:
Q  154 tttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    ||||| ||||||||  |||||||||||||   ||| |||||| |||||| |||||| ||| ||| ||||| |||||||||||||    
T  45150613 ttttttttatattgttgtttggtttggttcgattggtaaaatcaaaaccgcaaaccaaacaaaatcatgctattgagtaaaaaa 45150530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 28927756 - 28927802
Alignment:
Q  133 gtgatatatatttaattagtgtttttcttatattgcagtttggtttg 179  Q
    |||| ||||||||||||| ||||||||||||||||| ||||| ||||    
T  28927756 gtgacatatatttaattattgtttttcttatattgcggtttgatttg 28927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 40494826 - 40494896
Alignment:
Q  113 ttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    ||||| ||||||||||| |||||| |||| ||||| |||  |||||||||| ||| |||||| ||||||||    
T  40494826 ttctaagagtattggtctaagtgacatatttttaactagcatttttcttatgttgtagtttgttttggttt 40494896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 6102266 - 6102344
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgttttt 158  Q
    ||||| ||||| |||||| |||||||||||||| ||| ||||||||||| || | |||  | || ||||||||||||||||    
T  6102266 aaaaaaatgtcattttataaaagttttcattgaatttttatgagtattgatctaggtg--acatgtttaattagtgttttt 6102344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 21069370 - 21069411
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaaaa 81  Q
    ||||||||||||||||| ||||||||| |||||||| |||||    
T  21069370 taagagttcaagtagtacataaatacatttttgaaacaaaaa 21069411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 54273536 - 54273444
Alignment:
Q  174 ggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaa-aaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||  |||| |||||| |||||| |||||| |||  || |||||| |||||||| |||| |||||| ||||||| ||||| ||||||    
T  54273536 ggtttggttcggttgctaaaataaaaaccgcaaaccaaaccgaatcatgcggttgagtaaaaaaaatgatccgaatacatccgaaccaaatgc 54273444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 26758606 - 26758774
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  26758606 agaaaaaatatgtcatttgattaaagttttcattgagtttctatgggtattggttcaagtgatatatattttattagtgtttttcttatattgcggtttg 26758705  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    ||||||||| |||| |||||| |||||| |||||| ||| ||| |||||| |||||||| |||||||||    
T  26758706 gtttggtttggttggtaaaatcaaaaccgcaaaccgaaccaaatcatgcggttgagtaacaaattgatc 26758774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 48169048 - 48169217
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||    
T  48169048 aagaaaaaatatgtcattttattaaagttttcattaagtttctttgagtattggtctaagtgatatatattttattagtatttttcttatattgctgttt 48169147  T
Q  174 ggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    |||||||||| |||| |||||| |||||| |||||| ||| |||||||| | || |||||||||||||||    
T  48169148 ggtttggtttggttggtaaaatgaaaaccgcaaaccgaaccaaaccatgtggttaagtaaaaaattgatc 48169217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 22256003 - 22255809
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||  | |||||||||||||| |||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||||||| || |||||    
T  22256003 agaaaaaatataacattttattaaagtttccattgaatttatatgagtattggtctacgtgatatatatttaattagtgtttttcttatatcgcggtttg 22255904  T
Q  175 gtttggttt----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||     ||||||||||| |||||| |||||| ||| |||| |||||||||||||||||| |||| |||||||||| |||| ||||||    
T  22255903 gtttggtttggtcggttgataaaatcaaaaccgcaaaccgaaccaaactatgcgattgagtaaaaaaatgattcaaatacatttgaactaaatgc 22255809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 55467350 - 55467240
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||  |||    
T  55467350 aaagaaaaaacatgtcattttattaaagttttcattgagtttctatgagtattggttcaagtgatatatatttagttagtgtttttcttatattgaggtt 55467251  T
Q  173 tggtttggttt 183  Q
    |||||||||||    
T  55467250 tggtttggttt 55467240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 45914905 - 45914727
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  45914905 aaaaaatatgtcattttattaaagttttcattgagcctctttgagtattggtccaaatgatatatatttaattagtatttttcttatattgcggtttggt 45914806  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    | |          |||||| |||||| |||||| ||| |||||||||| |||||||||| |||||||| ||||||| ||||| ||||||    
T  45914805 tag----------taaaatcaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaatattgatccgaatacatccgaaccaaatgc 45914727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 84 - 257
Target Start/End: Complemental strand, 46253148 - 46252964
Alignment:
Q  84 atgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatat------atatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| ||||||||    
T  46253148 atgtcattttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatatatatttaattagtgtttttcttatattgcggtttggtt 46253049  T
Q  178 tggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
    ||||||      |||  ||||||||||||| |||||| ||| ||||||| || |||| |||||||||||||  ||||||| ||||    
T  46253048 tggtttgcttcggttagtaaaattaaaaccgcaaaccgaaccaaaccatacggttgaataaaaaattgatctgaatacatccgaa 46252964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 75 - 266
Target Start/End: Original strand, 8355706 - 8355901
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||| ||||| ||||||||||||||||||| | |||||||||||||||||| |  |||| ||||||||||||||| ||| |||||||||| |||||    
T  8355706 agaaaaaaaatgtcattttattaaagttttcattaaatttctatgagtattggtctagatgatgtatatttaattagtg-tttacttatattgcggtttg 8355804  T
Q  175 gtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgca 266  Q
    |||||||||      ||||||||||| |||||  |||||| |||||||||||| | |||||||||||| | ||| |||||||||| ||| |||||||    
T  8355805 gtttggtttgattcggttgataaaatcaaaactgcaaaccgaactaaaccatgtggttgagtaaaaaaataatctaaatacattcaaaccaaatgca 8355901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 45629571 - 45629671
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||| |||||||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  45629571 aaaaaatatgtcattttattaaagtttccgttgaaattctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgtggtttggt 45629670  T
Q  177 t 177  Q
    |    
T  45629671 t 45629671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 25918956 - 25918786
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    |||||| |||| |||||||||||||| |||||||||||||| |||||||||| | ||| ||||||||||||  ||||||||||||||||||  |||||||    
T  25918956 aaaaatttgtcattttattaaagtttccattgagtttctataagtattggtcgaggtggtatatatttaatccgtgtttttcttatattgcgttttggtt 25918857  T
Q  178 tggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    ||||||      |||| |||||| |||||| |||||| ||| |||||||||  |||||||||||| |||||    
T  25918856 tggtttggttcagttggtaaaatcaaaaccgcaaaccgaacaaaaccatgcagttgagtaaaaaaatgatc 25918786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 44651339 - 44651524
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||||||| |||||| |||||||||||||||||| |||||| |||| ||||||||   |||||||||| |||| |||||    
T  44651339 agaaaaaatatgtcattttataaaagtttccattgaatttctatgagtattggtctaagtgagatatgtttaattaacatttttcttatgttgcggtttg 44651438  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||| ||||     | |||||| ||||||||||| | ||| |||||||||| ||||| || ||| |||||| | ||||| | ||||||||||    
T  44651439 gttcggtt-----ggtaaaatgaaaaccacaaatcaaaccaaaccatgcggttgagcaagaaaatgatccgattacatccaaacaaaatgc 44651524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 52632509 - 52632675
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatattt-aattagtgtttttcttatattgcagtttgg 175  Q
    |||||||||||| |||||| ||||||| | |||||||| |||||||||||||  | || | |||||||| |||||||| |||| |||| |||| ||||||    
T  52632509 aaaaaatatgtcattttataaaagtttccgttgagtttgtatgagtattggtatatgtcacatatattttaattagtgcttttattatgttgcggtttgg 52632608  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
    |||||||| |||| |||||| |||||| |||||| ||| |||||||||  |||||||||||| ||||    
T  52632609 tttggtttggttggtaaaataaaaaccgcaaaccaaaccaaaccatgcagttgagtaaaaaagtgat 52632675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 42362926 - 42362752
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    |||| |||| ||||| |||||| ||||||| |||||||||| || ||||||||||| | |||| |||| |||||| | | ||| |||||| |||| ||||    
T  42362926 aagagaaaaaatgtcattttataaaagtttccattgagtttataagagtattggtctaggtgaaatatgtttaataaatatttgtcttatgttgcggttt 42362827  T
Q  174 ggtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    ||||||||||      |||| |||||| |||||| |||||| ||| |||||||||| |||||||||||| |||||    
T  42362826 ggtttggtttgattcagttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaaatgatc 42362752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 22472770 - 22472662
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||| ||  |  ||||||||||||||||||||||||| ||  | |||||||||| |||||||||||||||||||| |||| ||||     
T  22472770 agaaaaaatatgtcatttgatagatattttcattgagtttctatgagtattagtttaggtgatatatagttaattagtgtttttcttatgttgcggttta 22472671  T
Q  175 gtttggttt 183  Q
    |||||||||    
T  22472670 gtttggttt 22472662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 51660707 - 51660599
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| |||||||||||||||||||||| |||||||||| | |||| || | || | ||  |||||||||||| |||| |||||    
T  51660707 agaaaaaatatgtcattttataaaagttttcattgagtttctataagtattggtctaggtgaaatgtgttcagttgatgtttttcttatgttgcggtttg 51660608  T
Q  175 gtttggttt 183  Q
    |||||||||    
T  51660607 gtttggttt 51660599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 54122699 - 54122805
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| | |||||||||||| |||||||||||||||| ||||  || | || | || ||||||||||| |||||||||||||||| |||||    
T  54122699 agaaaaaatatgtcatattattaaagtttccattgagtttctatgaatattattctaggt-acatgtatttaattagcgtttttcttatattgcggtttg 54122797  T
Q  175 gtttggtt 182  Q
    ||||||||    
T  54122798 gtttggtt 54122805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 2832091 - 2831983
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||| ||||| |||||| ||||||| |||||||||| |||||||||||||||| |||| ||| |||| ||||  |||| |||||| || |||||||    
T  2832091 agaaaaaaaatgtcattttataaaagtttacattgagtttttatgagtattggtccaggtgacataaatttcattaaagtttatcttatgttacagtttg 2831992  T
Q  175 gtttggttt 183  Q
    |||| ||||    
T  2831991 gttttgttt 2831983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 21562928 - 21563108
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||| || ||| ||| ||| |||||||||||||||| |||| | |||| || |  ||||||| ||||||||||||||||| |||||    
T  21562928 agaaaaaatatgtcatttcataaaaatttacatcgagtttctatgagtatcggtctaggtgacatgt--ttaattaatgtttttcttatattgcggtttg 21563025  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
    ||||| ||  |||| |||||| ||||   |||||| ||| || || | |  |||||||||||| |||||  ||||||||||||    
T  21563026 gtttgtttcagttgctaaaataaaaaatgcaaaccgaaccaatccttacagttgagtaaaaaaatgatctgaatacattcgaa 21563108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 265
Target Start/End: Complemental strand, 8557448 - 8557288
Alignment:
Q  100 gttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaa 199  Q
    |||| |||||||||||||| |||||||||| | |||| |||| |||||| |   |||||||||| |||| ||||||||||     |||| |||||| |||    
T  8557448 gtttccattgagtttctatcagtattggtctaggtgagatatgtttaatcaacatttttcttatgttgcggtttggtttg-----gttggtaaaatgaaa 8557354  T
Q  200 accacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    | |||||||| ||| |||||||||| ||||| || ||| |||||| | ||||| ||||| ||||||    
T  8557353 atcacaaaccaaaccaaaccatgcggttgagcaagaaaatgatcctattacatccgaaccaaatgc 8557288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 37045690 - 37045796
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||| | |||||| |||||||||||||||||||||||||||||||||    ||| |||| ||||||||   |||||||||| ||   |||||||    
T  37045690 aaaaaatatgacattttataaaagttttcattgagtttctatgagtattggtcttgatgacatatgtttaattaacatttttcttatgttatggtttggt 37045789  T
Q  177 ttggttt 183  Q
    |||||||    
T  37045790 ttggttt 37045796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 50578702 - 50578596
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtc-caagtgatatatatttaattagtgtttttcttatattgcagtttgg 175  Q
    |||||||||||| |||||| |||  || |||||||||||||||||||||||||  | |||| |||||||||| ||   |||||||||| |||| ||||||    
T  50578702 aaaaaatatgtcattttataaaaacttccattgagtttctatgagtattggtcttaggtgagatatatttaactaacatttttcttatgttgcggtttgg 50578603  T
Q  176 tttggtt 182  Q
    |||||||    
T  50578602 tttggtt 50578596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 2565941 - 2565825
Alignment:
Q  141 tatttaattagtgtttttcttatattgcagtttggtttggtttc-----gttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaa 235  Q
    ||||||||||| |||||||||||||||| ||||||||||||||      |||| |||||| |||||| |||||| ||| ||||||| |  ||||||||||    
T  2565941 tatttaattagagtttttcttatattgcggtttggtttggtttgttttggttggtaaaatcaaaaccgcaaaccgaaccaaaccatccagttgagtaaaa 2565842  T
Q  236 aattgatccaaatacat 252  Q
    || | |||| |||||||    
T  2565841 aaataatccgaatacat 2565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 5640399 - 5640259
Alignment:
Q  107 ttgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggt-----ttcgttgataaaattaaaac 201  Q
    ||||| |||||| ||||| |||  | |||| |||| ||||||||   |||||||||| |||||||||||||||||     || |||| |||||| ||||     
T  5640399 ttgaggttctataagtatcggtttaggtgagatatgtttaattaacatttttcttatgttgcagtttggtttggtatggtttggttggtaaaatgaaaat 5640300  T
Q  202 cacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
    |||||||| |||||||||||||| |||||||| ||| ||||    
T  5640299 cacaaaccaaactaaaccatgcggttgagtaagaaaatgat 5640259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 4280664 - 4280837
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattg-----gtccaagtgatatatatttaattagtgtttttcttatattgca 169  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||| || ||     ||| | |||| |||| |||||| | ||||||||||||  |||     
T  4280664 agaaaaaatatgtcattttatagaagttttcattgagtttctatgattagtggtctagtctaggtgacatatgtttaatcaatgtttttcttatgctgcg 4280763  T
Q  170 gtttggtttg-----gtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaat 238  Q
    |||||  |||     |||  |||| |||||| |||||| |||||| ||| |||||||||| |||||||||||||    
T  4280764 gtttgacttgactttgttcggttggtaaaataaaaaccgcaaaccgaaccaaaccatgcggttgagtaaaaaat 4280837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 257
Target Start/End: Complemental strand, 17144437 - 17144262
Alignment:
Q  76 gaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttgg 175  Q
    ||||||||||||  |||||| ||||||| |||||| ||| | | | ||||| || | || | |||| |||||||| ||||||| |||  |||||||||||    
T  17144437 gaaaaaatatgttattttataaaagtttccattgaattttttttattattgatctaggtaacatatgtttaattaatgttttt-ttaagttgcagtttgg 17144339  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
    ||||     ||||||||||| |||||| |||||| ||| |||||||  | ||||||||||||  ||||| ||||||| ||||    
T  17144338 tttg-----gttgataaaataaaaaccgcaaaccaaaccaaaccatatggttgagtaaaaaagggatccgaatacatccgaa 17144262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 20846851 - 20846944
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc 168  Q
    |||||||||||||| |||||| ||||||||  ||||| || |||||||||| ||| | |||||||| || ||||||  ||||||||||| ||||    
T  20846851 agaaaaaatatgtcattttataaaagtttttgttgagcttatatgagtattagtctaggtgatatagatgtaattaaagtttttcttatgttgc 20846944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 32120741 - 32120790
Alignment:
Q  186 ttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaa 235  Q
    |||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  32120741 ttgataaaatcaaaaccgcaaacctaactaaaccatacgattgagtaaaa 32120790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 38681595 - 38681691
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||| |||||| |||||| |||||||||||||| ||| || ||||||| ||| |  ||  ||| |||||||||||||||||||||| |||| |||||    
T  38681595 aaaattatgtcattttataaaagttttcattgaatttttacgagtattagtctagatggcatagatttaattagtgtttttcttatgttgcggtttg 38681691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 4639239 - 4639290
Alignment:
Q  112 tttctatgagtattggtccaagtgatatatatttaattagtgtttttcttat 163  Q
    |||||||||||||| ||| |||||| |||| |||||||||||||||||||||    
T  4639239 tttctatgagtattagtcaaagtgagatatgtttaattagtgtttttcttat 4639290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 10481220 - 10481138
Alignment:
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||||||||  ||||||||||| |||||| |||| | ||  ||||||| || |||||||| ||| ||||||||||||||    
T  10481220 gtttggtttggttcggttgataaaataaaaaccgcaaatcaaatcaaaccatacggttgagtaataaagtgatccaaatacat 10481138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 55467409 - 55467367
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaaaaa 82  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  55467409 taagagttcaagtagtacataaatacatttttgaaagaaaaaa 55467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 10481326 - 10481217
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    |||| |||| ||||| ||||||  || ||| |||| ||||||||| ||||||| || | |||  |||| ||||||||  ||||||||||| |||| ||||    
T  10481326 aagacaaaaaatgtctttttatacaaatttccattaagtttctataagtattgatctaggtggcatatgtttaattacagtttttcttatgttgcggttt 10481227  T
Q  174 ggtttggttt 183  Q
    ||||||||||    
T  10481226 ggtttggttt 10481217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 38651735 - 38651686
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtat 124  Q
    |||||||||||||  |||||| ||||||| ||||||||||||||||||||    
T  38651735 agaaaaaatatgtaattttataaaagtttccattgagtttctatgagtat 38651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 48168986 - 48169025
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaa 79  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  48168986 taagagttcaagtagtacataaatacatttttgaaagaaa 48169025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 10744709 - 10744663
Alignment:
Q  133 gtgatatatatttaattagtgtttttcttatattgcagtttggtttg 179  Q
    |||||||| ||||||||||||||| |||||| |||| ||||||||||    
T  10744709 gtgatatagatttaattagtgtttatcttatgttgcggtttggtttg 10744663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 36330363 - 36330302
Alignment:
Q  91 tttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagt 152  Q
    ||||| |||||||||||||||||||| ||  |||||||| | |||| ||||| |||||||||    
T  36330363 tttataaaagttttcattgagtttctttggttattggtctaggtgacatatacttaattagt 36330302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 2566035 - 2565983
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtc 129  Q
    |||||||||||| ||| |||||||||| |||||| ||||||| | ||||||||    
T  2566035 aaaaaatatgtcatttcattaaagtttccattgaatttctataaatattggtc 2565983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 4669984 - 4670056
Alignment:
Q  110 agtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtt 182  Q
    ||||| |||||||||| ||  |||||| |||  |||||||| |||||||||||| |||| ||||| |||||||    
T  4669984 agtttatatgagtattagtttaagtgacataagtttaattattgtttttcttatgttgcggtttgatttggtt 4670056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 41455250 - 41455445
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcag---- 170  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  41455250 agaaaaaatatgtcattttattaaagtttccattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcggttcg 41455349  T
Q  171 -tttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
     ||||||||||||  |||| |||||| | |||| |||| | ||| |||||||| | ||||||||||||||||||  ||||||| ||||| ||||||    
T  41455350 atttggtttggttcggttggtaaaatcataaccgcaaatcgaaccaaaccatgtggttgagtaaaaaattgatcagaatacatccgaaccaaatgc 41455445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 28224564 - 28224388
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttca-ttgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttgg 175  Q
    |||||||||||| |||||||||| |||| | |||| ||||||||| ||||| || |  |||||||||||||||||||| |||||||||||||||||||||    
T  28224564 aaaaaatatgtcattttattaaaattttgaattgaatttctatgattattgatctagatgatatatatttaattagtggttttcttatattgcagtttgg 28224465  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||  |||| |||||| |||||| |||||| ||| |||| ||||  |||||||||||| |||||| |||||||    
T  28224464 tttggttcggttggtaaaatcaaaaccgcaaaccaaaccaaactatgcagttgagtaaaaaaatgatccgaatacat 28224388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 33793015 - 33793198
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| ||||| |||||||||| |||||||||| ||||||| || ||| ||| || | |||||||||||||||||||||||||||||||||||||||||    
T  33793015 aaaaaaaatgtcattttattaaaattttcattgaatttctataagcattagtctaaataatatatatttaattagtgtttttcttatattgcagtttggt 33793114  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||     ||||||||||| |||||| |||||| ||  ||||||  || |||||||||||| |||||  ||||||| ||||| ||||||    
T  33793115 ttg-----gttgataaaatcaaaaccgcaaaccaaatcaaaccacacggttgagtaaaaaaatgatctgaatacatccgaaccaaatgc 33793198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 42920744 - 42920566
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||| || || |  ||| |||||||||||||  ||||||||||| ||||||||||    
T  42920744 agaaaaaatatgtcattttataaaagttttaattgagtttctatgagtagtgatctagatgacatatatttaattaaagtttttcttatgttgcagtttg 42920645  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattc 254  Q
    |||| | |||| |  |||||| |||||| |||||| ||| |||||||||| |||||| ||||| |||| |||||||||||    
T  42920644 gttt-gattcgatcgtaaaataaaaaccgcaaaccaaaccaaaccatgcgcttgagtcaaaaagtgattcaaatacattc 42920566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 6633680 - 6633783
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||  |||||||||||||||| |||||    
T  6633680 agaaaaaatatgtcattttataaaagttttcattgagtttctatgagtattggtccacgtgacatagatttaattaaagtttttcttatattgcggtttg 6633779  T
Q  175 gttt 178  Q
    ||||    
T  6633780 gttt 6633783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 261
Target Start/End: Original strand, 22553734 - 22553923
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc-----a 169  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||||||||| || | |||| |||| ||||||||||||||||||||| ||||          
T  22553734 agaaaaaatatgtcattttatagaagttttaattgagtttctatgagtattgatctaggtgagatatgtttaattagtgtttttcttatgttgcggtttg 22553833  T
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaa 261  Q
    |||||||||||||| |||| ||||| ||||| | |||||| ||| |||| ||| | ||||||||||||  ||||||||||||| ||||||||    
T  22553834 gtttggtttggtttggttggtaaaa-taaaatcgcaaaccgaacaaaactatggggttgagtaaaaaa-cgatccaaatacatccgaacaaa 22553923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 25495471 - 25495641
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc-----agt 171  Q
    |||||| ||||| |||||||||||||| ||||||  || |||||||||||||| |  ||||| ||||||||||||| |||||||||||||||     |||    
T  25495471 aaaaaaaatgtcattttattaaagtttccattgaacttatatgagtattggtctagatgatacatatttaattagtttttttcttatattgcggtttagt 25495570  T
Q  172 ttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    |||||||||||  |||| ||||||||||||| ||||   ||| |||||||||| |||||||||||| |||||    
T  25495571 ttggtttggttcggttggtaaaattaaaaccgcaaa-tgaaccaaaccatgcggttgagtaaaaaaatgatc 25495641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 265
Target Start/End: Original strand, 2423201 - 2423375
Alignment:
Q  91 tttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgat 190  Q
    ||||| |||||||  ||||||||| |||||||||| ||| | |||| ||| ||||||||| |||||||||||| |||| |||||||||||||  |||| |    
T  2423201 tttataaaagtttctattgagtttttatgagtatttgtctaggtgacatagatttaattaatgtttttcttatgttgcggtttggtttggttcggttggt 2423300  T
Q  191 aaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||| |||||| |||| | ||| |||||||| | |||||  ||||| ||||| |||||||| | ||||||||||    
T  2423301 aaaatgaaaaccgcaaatcaaaccaaaccatgtggttgagggaaaaagtgatcaaaatacatccaaacaaaatgc 2423375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 75 - 264
Target Start/End: Complemental strand, 2802690 - 2802504
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata--tttaattagtgtttttcttatattgcagtt 172  Q
    |||||||||| ||| |||||| ||||||||| |||||||| |||||||||||||| |  |||  ||||  || |||||||||||||||||| |||         
T  2802690 agaaaaaatacgtcattttatcaaagttttcgttgagtttttatgagtattggtctagatgacttataggttaaattagtgtttttcttatgttg----- 2802596  T
Q  173 tggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatg 264  Q
    ||||||| ||| |||| |||||| ||||||||||||  ||  |||||||||| || ||||||||| |||||| ||||||||| |||||||||    
T  2802595 tggtttgatttggttggtaaaataaaaaccacaaactgaaacaaaccatgcggttaagtaaaaaagtgatccgaatacattcaaacaaaatg 2802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 5175334 - 5175152
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| ||||| |||||||||| |||||||||| ||| ||| || ||| ||| |  | ||||||||||||| ||||||||| ||||||||| |||||||    
T  5175334 aaaaaaaatgtcattttattaaaattttcattgaatttttataagcattagtctatataatatatatttaatcagtgttttttttatattgcggtttggt 5175235  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||||     | |||||| ||||| ||||||| ||| |||||| | | |||||||||||| |||||||||||||| ||||| ||||||    
T  5175234 ttggtt-----ggtaaaatcaaaac-acaaaccaaaccaaaccacgtggttgagtaaaaaaatgatccaaatacatccgaaccaaatgc 5175152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 38147488 - 38147596
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| || |||||| |||||||||||||||||||||||| |||||||| | |||| | || ||||||||||||||||||||| |||  |||||    
T  38147488 agaaaaaatatatcattttataaaagttttcattgagtttctatgaatattggtctatgtgacacatgtttaattagtgtttttcttatgttggggtttg 38147587  T
Q  175 gtttggttt 183  Q
    |||||||||    
T  38147588 gtttggttt 38147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 18432467 - 18432648
Alignment:
Q  76 gaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttgg 175  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||||||||||  | |||| ||| | ||||||| ||||||| |||| |||| ||||||    
T  18432467 gaaaaaatatgtcattttataaaagttttcattgattttctatgagtattggtataggtgacatagacttaattaatgttttttttatgttgcggtttgg 18432566  T
Q  176 -----tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
         |||||||  ||||||||||| |||||| |||||| ||| |||| ||||| |||| || |||| | || |||||||||    
T  18432567 tttgatttggttcggttgataaaataaaaaccgcaaaccaaaccaaactatgcggttgaatacaaaaataattcaaatacat 18432648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 36568091 - 36568278
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagt--- 171  Q
    |||||||||||||| || ||| ||||||| |||||||||| |||||||||||||||||||||||||        |||||||||||||||||||  ||       
T  36568091 agaaaaaatatgtcattgtatcaaagtttccattgagtttttatgagtattggtccaagtgatata--------tagtgtttttcttatattgtggtttg 36568182  T
Q  172 --ttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
      |||||||||||  |||| |||||| |||||| |||||  ||| |||||||| | |||||| |||||||||||  |||||||  |||| ||||||    
T  36568183 gattggtttggttcggttggtaaaatcaaaaccgcaaactgaaccaaaccatgtggttgagttaaaaattgatctgaatacatctgaaccaaatgc 36568278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 242
Target Start/End: Original strand, 2589370 - 2589538
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    |||||||| ||||||| ||| || ||||||| |||| ||||||||||||||||||   |  ||| |||||||||||||||||||||||||| |||| |||    
T  2589370 aaagaaaatatatgtcattt-ataaaagtttccatttagtttctatgagtattggcgtagatgacatatatttaattagtgtttttcttatgttgcggtt 2589468  T
Q  173 tggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
    || || ||||  |||| |||||| |||||   ||||| ||| |||||||||| | |||||||||| ||||    
T  2589469 tgattcggttcagttggtaaaataaaaactggaaaccgaaccaaaccatgcggtagagtaaaaaagtgat 2589538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 264
Target Start/End: Complemental strand, 2796529 - 2796343
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata--tttaattagtgtttttcttatattgcagtt 172  Q
    |||||||||| ||| |||||| ||||||| | |||||||| |||||||||| ||| |  |||  ||||  || |||||||||||||||||| |||         
T  2796529 agaaaaaatacgtcattttatcaaagtttccgttgagtttttatgagtattagtctagatgacttataggttaaattagtgtttttcttatgttg----- 2796435  T
Q  173 tggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatg 264  Q
    ||||||| ||| |||| |||||| ||||||||||||  ||  |||||||||| || ||||||||| |||||| ||||||||| |||||||||    
T  2796434 tggtttgatttggttggtaaaataaaaaccacaaactgaaacaaaccatgcggttaagtaaaaaagtgatccgaatacattcaaacaaaatg 2796343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 4414612 - 4414793
Alignment:
Q  90 ttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt----cg 185  Q
    |||||| |||||||||||||||||||||| |||||||||  |  ||| |||| |||||||| |||||||||||| ||| |||||||||||||||     |    
T  4414612 ttttataaaagttttcattgagtttctataagtattggtttatatgacatatgtttaattaatgtttttcttatgttgtagtttggtttggtttgttcag 4414711  T
Q  186 ttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgcaa 267  Q
    ||  |||||| ||||| ||||||| ||  ||||||| || |||||||||||| ||||   |||||||  |||| ||||||||    
T  4414712 ttcgtaaaataaaaacaacaaaccaaatcaaaccatacggttgagtaaaaaaatgatatgaatacatctgaaccaaatgcaa 4414793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 22747269 - 22747119
Alignment:
Q  104 tcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaacca 203  Q
    |||| |||||||||||| ||||| || | |||| |||| || ||| || ||||||||||| |||  |||||||| ||||  |||||| |||| ||||||     
T  22747269 tcatcgagtttctatgattattgatctaggtgacatatgttcaataagcgtttttcttatgttgtggtttggttcggttcggttgatcaaataaaaaccg 22747170  T
Q  204 caaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattc 254  Q
    |||||| ||  |||||||||| |||| |||||||||||||| |||||||||    
T  22747169 caaaccgaatcaaaccatgcggttgaataaaaaattgatccgaatacattc 22747119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 34881023 - 34880918
Alignment:
Q  78 aaaaatatgtcgtttt-attaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    ||||||||||| |||| || ||||||| |||||||||| |||||||||||||  |||||  ||||||||||||| |||||||||||| |||| ||||| |    
T  34881023 aaaaatatgtcatttttataaaagtttccattgagttt-tatgagtattggtttaagtggcatatatttaattaatgtttttcttatgttgcggtttgat 34880925  T
Q  177 ttggttt 183  Q
    |||||||    
T  34880924 ttggttt 34880918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 252
Target Start/End: Original strand, 19402614 - 19402792
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||||||||| |  ||| ||| || ||||||||||||||||||||||||    ||||| |||  |||||||| | ||| ||||||||||| |||||||     
T  19402614 aaaaatatgtcatcctataaaaattctcattgagtttctatgagtattgggttgagtgacataagtttaattaatatttctcttatattgcggtttggtg 19402713  T
Q  178 tg----gtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    ||    |||| |||| |||||| |||||| ||||| |||| ||||| |||| |||||||||||| |  |||||||||||    
T  19402714 tgtttagtttggttggtaaaataaaaaccgcaaacataaccaaaccgtgcggttgagtaaaaaaattgtccaaatacat 19402792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 263
Target Start/End: Original strand, 23418345 - 23418528
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||||||  |||||  |||||| ||||  |||||||||||| |||||| | |||| ||||  ||||||| |||||||||||| ||||     |    
T  23418345 agaaaaaatatgtcagtttatagaagtttgcattttgtttctatgagtgttggtctaggtgacatatcattaattaatgtttttcttatgttgc-----g 23418439  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaat 263  Q
    ||||||||  || | |||||| |||||| |||||| ||| |||||| ||| |||||||| ||| |||||| |||| || ||||| ||||    
T  23418440 gtttggttcggtcggtaaaataaaaacctcaaaccgaaccaaaccacgcggttgagtaataaaatgatccgaatatatccgaaccaaat 23418528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 6595370 - 6595479
Alignment:
Q  136 atatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaa 235  Q
    |||||| ||||||||   |||||||||| |||| |||||||||||||| |||| |||||| |||||| |||||| ||| |||||||||  ||||| || |    
T  6595370 atatatgtttaattaacatttttcttatgttgcggtttggtttggtttggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcagttgagcaaga 6595469  T
Q  236 aattgatcca 245  Q
    || |||||||    
T  6595470 aaatgatcca 6595479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 250
Target Start/End: Original strand, 23623410 - 23623559
Alignment:
Q  106 attgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt-----cgttgataaaattaaaa 200  Q
    |||||||||||||||||||||||| | |||| || ||||||||||     |||||||| |||| ||||||||||||||      |||  | |||| ||||    
T  23623410 attgagtttctatgagtattggtctaggtgacatgtatttaattaaaaaatttcttatgttgcggtttggtttggtttggttcggtttgtcaaatgaaaa 23623509  T
Q  201 ccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatac 250  Q
    || |||||| ||| |||||||||| |||||||||||| |||||| |||||    
T  23623510 ccgcaaaccaaaccaaaccatgcggttgagtaaaaaagtgatccgaatac 23623559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 39730638 - 39730738
Alignment:
Q  82 atatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggt 181  Q
    ||||||| |||||| ||| |||||||||||||| ||| |||||||||| | |||| |||| ||||||||   |||||||||| |||||||| ||||||||    
T  39730638 atatgtcattttataaaacttttcattgagtttttataagtattggtctaggtgagatatgtttaatta-catttttcttatgttgcagttcggtttggt 39730736  T
Q  182 tt 183  Q
    ||    
T  39730737 tt 39730738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 10090606 - 10090678
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaa 147  Q
    |||||||| ||||| |||||||||||||||| |||| ||||| |||||||||||| |  ||||||||||||||    
T  10090606 agaaaaaagatgtcattttattaaagttttctttgaatttctctgagtattggtctagatgatatatatttaa 10090678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 29411652 - 29411600
Alignment:
Q  361 aattgacaaactagaagaaatatctcattgcaatacttaatttcgtggcctag 413  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  29411652 aattgacaaaatagaagaaatatctcattgcgatacttaatttcgtgtcctag 29411600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 41805530 - 41805442
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttat 163  Q
    ||||||||| |||| |||||| ||||||| |||||||||||||| |||||||||| | |||| ||||  ||||||| ||| ||||||||    
T  41805530 agaaaaaatgtgtcattttataaaagtttccattgagtttctataagtattggtctaggtgacatatgcttaattaatgtctttcttat 41805442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 11402974 - 11403081
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||||||  |||||| |||||| ||| ||||||||| |||| | |||| |||| ||||||||   |||||||||| |||| |||||    
T  11402974 agaaaaaatatgtcattttatacaagtttccattgaatttatatgagtatcggtctaggtgagatatgtttaattaacatttttcttatgttgcggtttg 11403073  T
Q  175 gtttggtt 182  Q
    ||| ||||    
T  11403074 gttcggtt 11403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 40331185 - 40331004
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||| |||||  |||   |||| |||||||||  |||||| |||| |||||| |||| |||||||||||||||| |||| | || |||||||    
T  40331185 aaaaaatatgtcattttaaaaaaaaattcagtgagtttct--gagtat-ggtctaagtgacatatgtttaattagtgttttt-ttatgtagcggtttggt 40331090  T
Q  177 ttggtttc-----gttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
    || ||||      |||| |||||| ||||||||||||| || ||||| || |  |||||||||||| |||||||||||||| ||||    
T  40331089 ttagtttgattctgttggtaaaataaaaaccacaaaccgaattaaactatacagttgagtaaaaaaatgatccaaatacatccgaa 40331004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 36568029 - 36568071
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaaaaa 82  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  36568029 taagagttcaagtagtacataaatacatttttgaaagaaaaaa 36568071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 7591169 - 7591087
Alignment:
Q  92 ttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    ||||| |||||||||||||||||||||||||||| ||  | |||| ||| |||| |||||| |||||||||  |||| |||||||    
T  7591169 ttattgaagttttcattgagtttctatgagtatttgt--atgtgacatagatttgattagtatttttcttaagttgcggtttggt 7591087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 8542030 - 8541986
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagt 122  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  8542030 aaaaaatatgtcattttat-aaagttttcattgagtttctatgagt 8541986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 34111483 - 34111381
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||| ||||| |||||| ||||| | ||||||||||  ||||||||| ||  | ||||||||| |||||||| | |||||||||| |||| ||||||||    
T  34111483 aaaaaaatgtcattttataaaagtgtccattgagttta-atgagtattagtttaggtgatatatgtttaattaat-tttttcttatgttgcggtttggtt 34111386  T
Q  178 tggtt 182  Q
    |||||    
T  34111385 tggtt 34111381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 39052948 - 39053040
Alignment:
Q  90 ttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtt 182  Q
    |||||| |||||||||| |||||||||||||||||||||  || ||| |||| | |||  | ||||| | ||||||||  |||||||||||||    
T  39052948 ttttataaaagttttcactgagtttctatgagtattggtttaaatgacatatgtataaggattgtttattttatattgttgtttggtttggtt 39053040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 691216 - 691129
Alignment:
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
    |||||||||||||  |||| |||||| |||||| |||| | ||| |||||||||| ||||| || ||| |||||||| ||||| ||||    
T  691216 gtttggtttggttcggttggtaaaatgaaaaccgcaaatcaaaccaaaccatgcggttgagcaagaaaatgatccaattacatccgaa 691129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 42920161 - 42920086
Alignment:
Q  190 taaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||| |||||| |||| | ||| |||||||||| |||||| ||||| |||| ||||||||||| ||| ||||||    
T  42920161 taaaataaaaaccgcaaatcaaaccaaaccatgcgcttgagtcaaaaagtgattcaaatacattcaaaccaaatgc 42920086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 34087813 - 34087847
Alignment:
Q  148 ttagtgtttttcttatattgcagtttggtttggtt 182  Q
    ||||||||||||||||||||| |||||||||||||    
T  34087813 ttagtgtttttcttatattgcggtttggtttggtt 34087847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 42119337 - 42119379
Alignment:
Q  215 aaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||    
T  42119337 aaaccatgcggttgagtaaaaaattgatccgaatacatccgaa 42119379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 17131723 - 17131651
Alignment:
Q  165 ttgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||| |||||||||||||   ||| |||||| |||||| |||||| ||| ||| ||||| |||||||||||||    
T  17131723 ttgctgtttggtttggttcgattggtaaaatcaaaaccgcaaaccaaacaaaatcatgctattgagtaaaaaa 17131651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 32244018 - 32243946
Alignment:
Q  165 ttgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||| |||||||||||||   ||| |||||| |||||| |||||| ||| ||| ||||| |||||||||||||    
T  32244018 ttgctgtttggtttggttcgattggtaaaatcaaaaccgcaaaccaaacaaaatcatgctattgagtaaaaaa 32243946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 40692857 - 40692928
Alignment:
Q  110 agtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtt 182  Q
    |||||| || |||||| ||| | |||| |||| |||||||||||||||||||||  ||| |||||||||||||    
T  40692857 agtttccataagtatttgtctaggtgacatatgtttaattagtgtttttcttat-gtgcggtttggtttggtt 40692928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 9686425 - 9686607
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| |  ||||||||||||||||||||| ||||||||||||||| || |  ||||||||||||||||||||||||||||| |||||||||||    
T  9686425 agaaaaaatattttattttattaaagttttcattgaatttctatgagtattgatctagatgatatatatttaattagtgtttttcttacattgcagtttg 9686524  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
    ||||||||  |||| |||||| |||||| ||| || ||  |||||||||| |||||||||||| |||| | ||||||| ||||    
T  9686525 gtttggttcggttggtaaaatcaaaaccgcaatccgaatcaaaccatgcggttgagtaaaaaaatgattcgaatacatccgaa 9686607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 7169785 - 7169608
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  7169785 aaaatatatgtcattttattaaagttttcattgaatttctatgagtattggtctatatgatatatatttaattagtgtttttcttatattgcagtttggt 7169686  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaacc-atgcgattgagtaaaaaattgatccaaatacattcgaac 258  Q
    | |     |||| |||||| |||||  |||||| ||| ||||| ||||| |||| ||||||| |||||| ||||||| |||||    
T  7169685 tcg-----gttggtaaaatcaaaactgcaaaccgaaccaaaccaatgcggttgattaaaaaaatgatccgaatacatccgaac 7169608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 257
Target Start/End: Original strand, 29048925 - 29049094
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||||||             
T  29048925 aaaaaaatgtcattttattaaagttttcattgagtttttatgagtattggtctaaatgatatatatttaattaatgtttttcctatattgc--------- 29049015  T
Q  178 tggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaa 257  Q
     ||||| | || |||||| |||||| |||||| ||| |||||||||| |||||||||||| |||||||||||||| ||||    
T  29049016 -ggtttggctggtaaaatcaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaaatgatccaaatacatccgaa 29049094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 13092373 - 13092481
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||| |||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  13092373 agaaaaattatgtcattttattaacattttcattgagtttctatgagtattggtccaagtaaaatatatttaattagtgtttttcttatattgcggtttg 13092472  T
Q  175 gtttggttt 183  Q
     ||| ||||    
T  13092473 atttagttt 13092481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 22414188 - 22414372
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatattta-attagtgtttttcttatattgcagtttgg 175  Q
    |||||||||||| |||||||||||||| |||||| ||| | |||||||||||| |  ||||||||||||  |||||||||||||||||||||| ||||||    
T  22414188 aaaaaatatgtcattttattaaagtttccattgaatttatgtgagtattggtctagatgatatatatttggattagtgtttttcttatattgcggtttgg 22414287  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    || |||| |||    ||||| ||||||||||| | ||| |||||||||  ||||||||||| || |||||||||||| ||||| ||||||    
T  22414288 ttcggtt-cgt----aaaatgaaaaccacaaatcgaaccaaaccatgcagttgagtaaaaagtttatccaaatacatccgaaccaaatgc 22414372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 24644658 - 24644556
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtt 177  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||   ||||||    
T  24644658 aaaaatatgtcattttattaaagttttcattgaggttctatgagtattggtccaaatgatatata--taattagtgtttttcttatattgcgacttggtt 24644561  T
Q  178 tggtt 182  Q
    |||||    
T  24644560 tggtt 24644556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 19134809 - 19134619
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||| || ||||||| |||| ||||||||||||||||  || | |||| ||| |||||||||||||||||||||| |||| |||||    
T  19134809 agaaaaaatatgtcattt-ataaaagtttccattaagtttctatgagtatttatctaggtgacatagatttaattagtgtttttcttatgttgcggtttg 19134711  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgca 266  Q
    ||||||||  |||| |||||| |||||  |||||| ||| ||||||| || ||||| |||||| | |||| | ||||| | ||| |||||||    
T  19134710 gtttggttcggttggtaaaatgaaaactgcaaaccaaaccaaaccatacggttgagaaaaaaagtaatcctagtacatccaaaccaaatgca 19134619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 31945162 - 31944996
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| |||||| |||||||||| | |||| ||||||||| |||| ||  | ||||||||||||||||||||||||||||||||||||| ||||    
T  31945162 agaaaaaatatatcgttt-attaaagtttcctttgactttctatgaatattagtttaggtgatatatatttaattagtgtttttcttatattgcaatttg 31945064  T
Q  175 gtttg-----gtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||||     |||| | || | |||| |||||||||||| |||| ||| |||||| ||||||||||||    
T  31945063 gtttggattagtttggatggtgaaatcaaaaccacaaacttaaccaaatcatgcggttgagtaaaaaa 31944996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 13531976 - 13531810
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| | ||| |||||| ||||||| |||||| |||||||||||||||||| | |||| |||| ||||||||   |||||||||| |||| |||||||    
T  13531976 aaaaaaaaagtcattttataaaagtttccattgaatttctatgagtattggtctaggtgagatatgtttaattaacatttttcttatgttgcggtttggt 13531877  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    ||||||| |||| |||||| |||| | |||||| ||| |||||||||| ||||| || ||| |||||    
T  13531876 ttggtttggttggtaaaatgaaaatcgcaaaccaaaccaaaccatgcggttgagcaagaaaatgatc 13531810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 12108285 - 12108179
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| | || | ||| |||||||| |||||||| |||| |||| |||||    
T  12108285 agaaaaaatatgtcattttataaaa-ttttcattgagtttctatgagtattggtctaggttacataaatttaatttgtgtttttattatgttgcggtttg 12108187  T
Q  175 gtttggtt 182  Q
    ||||||||    
T  12108186 gtttggtt 12108179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 4577474 - 4577654
Alignment:
Q  81 aatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttgg 180  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||| |  |||  ||  ||||||||| ||||||||||| ||||     ||||| |    
T  4577474 aatatgtcgttttataaaagttttcattgaatttctatgagtattggtctacctgaattaggtttaattagcgtttttcttatgttgc-----ggtttag 4577568  T
Q  181 tttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgca 266  Q
    ||| ||| ||||||| |||||  |||||| ||| ||||| |||| || ||||||||| |||||| ||| ||| | ||| |||||||    
T  4577569 tttggttaataaaataaaaactgcaaaccgaaccaaaccttgcggttaagtaaaaaagtgatccgaattcatccaaaccaaatgca 4577654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 252
Target Start/End: Original strand, 8064863 - 8065047
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtg-tttttcttatattgcagt 171  Q
    |||||||| ||||||| ||| || ||||||||||||||||||||||||||||||    |  ||| |||||||||||||||| |||||||||| |||| ||    
T  8064863 aaagaaaatatatgtcattt-ataaaagttttcattgagtttctatgagtattgacatagatgacatatatttaattagtgttttttcttatgttgcggt 8064961  T
Q  172 ttg-----gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||     ||||||||  |||  |||||| ||||||||||||| ||| || |||||   |||||||||||| |||||| |||||||    
T  8064962 ttgatttagtttggttcggtttgtaaaataaaaaccacaaaccgaaccaacccatgttgttgagtaaaaaagtgatcctaatacat 8065047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 6400211 - 6400306
Alignment:
Q  83 tatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttt-tcttatattgcagtttggtt 177  Q
    |||||| |||||||||||||| |||||| ||| |||||||||||||| |  ||||||||||||||||||||||||  |||||||||  ||||||||    
T  6400211 tatgtcattttattaaagtttccattgaatttatatgagtattggtctagatgatatatatttaattagtgttttagcttatattgaggtttggtt 6400306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 892049 - 891945
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||| ||||| |||||| ||||||| |||||||||||||| |||||||||  | |||| ||| |||||||||  ||||||||||| |||| ||||     
T  892049 agaaaaaacatgtcattttataaaagtttccattgagtttctataagtattggtataggtgacatagatttaattaaagtttttcttattttgcggtttc 891950  T
Q  175 gtttg 179  Q
    |||||    
T  891949 gtttg 891945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 16971463 - 16971410
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattg 126  Q
    |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  16971463 aaagaaaaaatatgtcattttattaaagtttccattgtgtttctatgagtattg 16971410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 265
Target Start/End: Complemental strand, 16970420 - 16970298
Alignment:
Q  137 tatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaa 236  Q
    |||||||||||||||||||||| |||||||||||||||||| |     |||| |||| | |||| | ||||||  || ||||||||   ||||||||| |    
T  16970420 tatatatttaattagtgttttt-ttatattgcagtttggttcg-----gttggtaaagtcaaaatcgcaaaccggaccaaaccatgtagttgagtaaaca 16970327  T
Q  237 attgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||||||||| ||||| ||||||    
T  16970326 attgatccaaatacatccgaactaaatgc 16970298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 4563242 - 4563293
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggt 128  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  4563242 aaaaaatatgccgttttataaaagtttttattgagtttctatgagtattggt 4563293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 14564822 - 14564958
Alignment:
Q  97 aaagttttcattgagtttctatgagtattggtccaagtgata--tatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaa 194  Q
    |||||||||||||||||| ||||||| ||||||    |||||  ||||||||||||||||||||||||| ||||| ||||||||||||  |||  || ||    
T  14564822 aaagttttcattgagtttttatgagt-ttggtct---tgatacatatatttaattagtgtttttcttatgttgcaatttggtttggttcggttcgtataa 14564917  T
Q  195 ttaaaaccacaaacctaactaaaccatgcgattgagtaaaa 235  Q
    | |||||  |||||  ||| |||||||||  ||||||||||    
T  14564918 taaaaactgcaaactaaaccaaaccatgcagttgagtaaaa 14564958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 30752968 - 30753109
Alignment:
Q  97 aaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaatt 196  Q
    ||||||| ||||  ||||||||||||||||||  | |||||||| ||||| ||| |||||||||||| |||| |||||||| ||||     | ||||||     
T  30752968 aaagtttccattatgtttctatgagtattggtttatgtgatatagatttagttaatgtttttcttatgttgcggtttggttcggtt-----ggtaaaata 30753062  T
Q  197 aaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    |||||| |||||  ||| |||| ||||  |||||||||||| |||||    
T  30753063 aaaaccgcaaactgaaccaaactatgcagttgagtaaaaaagtgatc 30753109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 32190389 - 32190317
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaa 147  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||| |||| ||| | |||| ||| ||||||    
T  32190389 agaaaaaatatgtcattttataaaagtttccattgagtttctatgaatattagtctaggtgacatagatttaa 32190317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 15837327 - 15837209
Alignment:
Q  143 tttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
    |||||||| |||||||||||| |||| |||||||| |||| |     |||||| ||||||||||||| |||  ||||||| | || || |||||  ||||    
T  15837327 tttaattaatgtttttcttatgttgcggtttggttcggttgc-----taaaataaaaaccacaaaccaaaccgaaccatgtggttaaggaaaaatatgat 15837233  T
Q  243 ccaaatacattcgaacaaaatgca 266  Q
    |||||| ||| ||||| |||||||    
T  15837232 ccaaattcatccgaaccaaatgca 15837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 6267474 - 6267536
Alignment:
Q  174 ggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaa 236  Q
    |||||||||| |||  |||||| |||||| |||||| ||| |||||||||| |||||||||||    
T  6267474 ggtttggtttggtttttaaaataaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaa 6267536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 27100307 - 27100131
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| | ||| ||||||||||||||||||||| ||| ||| |||||||||  |||||||||||||||||  ||||||||||||||||||| |||||||    
T  27100307 aaaaaaaaagtcattttattaaagttttcattgaatttatataagtattggtataagtgatatatatttaaagagtgtttttcttatattgcggtttggt 27100208  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacatt 253  Q
    ||||||| |||| |||||| |||||| |||||| ||| ||||||| || |||||||||||| |||||  ||||||||    
T  27100207 ttggtttggttggtaaaatcaaaaccgcaaaccaaaccaaaccatacggttgagtaaaaaagtgatctgaatacatt 27100131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 77 - 253
Target Start/End: Original strand, 27177996 - 27178172
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| | ||| ||||||||||||||||||||| ||| ||| |||||||||  |||||||||||||||||  ||||||||||||||||||| |||||||    
T  27177996 aaaaaaaaagtcattttattaaagttttcattgaatttatataagtattggtataagtgatatatatttaaagagtgtttttcttatattgcggtttggt 27178095  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacatt 253  Q
    ||||||| |||| |||||| |||||| |||||| ||| ||||||| || |||||||||||| |||||  ||||||||    
T  27178096 ttggtttggttggtaaaatcaaaaccgcaaaccaaaccaaaccatacggttgagtaaaaaagtgatctgaatacatt 27178172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 1812856 - 1813046
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |  | ||||||||||||||||||||||| ||||||||| |||||    
T  1812856 agaaaaaatatgtcattttattaaaattttcattgaatttctatgagtattggtctagataatatatatttaattagtgttttttttatattgcggtttg 1812955  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||  |||| |||| |||||| |||||| |||||  ||| |||| ||||| |||||||||| | |||||| |||| || ||||| ||||||    
T  1812956 gttccgtttggttggtaaaatcaaaaccgcaaactgaaccaaactatgcggttgagtaaaataatgatccgaatatatccgaaccaaatgc 1813046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 252
Target Start/End: Original strand, 40849237 - 40849417
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||    ||| ||| |||||||||| ||| ||||||| |||| |||||||    
T  40849237 aaaaaatatgtcgttttataaaagtttccattgagtttctatgagtattggtctcgatgacatagatttaattagagttgttcttatgttgcggtttggt 40849336  T
Q  177 ttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||      |||| |||||| |||||| |||||| ||| |||||||||| |||||||||||| |||||| |||||||    
T  40849337 ttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaagtgatccgaatacat 40849417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 20334969 - 20335136
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||  |||||    
T  20334969 agaaaaaatatgtcaatttattaaagttttcattgaatttctatgagtattggtctaggtgatatacatttaattagtgtttttcttatattgtggtttg 20335068  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
     |||||||| |||  |||| | ||||   |||||| ||| ||||||| || ||||||  |||||||||    
T  20335069 atttggtttggttcgtaaagtcaaaatggcaaaccgaaccaaaccatacggttgagtgtaaaattgat 20335136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 265
Target Start/End: Complemental strand, 8568258 - 8568061
Alignment:
Q  72 gaaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagt 171  Q
    |||| ||||| |||||| |||||||||||||| |||||| |||||||||| |||||||    ||||||||||||||||||||||||||||||||||| ||    
T  8568258 gaaaaaaaaattatgtcattttattaaagtttccattgaatttctatgagcattggtcttgatgatatatatttaattagtgtttttcttatattgcggt 8568159  T
Q  172 ttggtttggtttcgt-----tgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||||| ||     || ||||||| ||||| |||||| | | ||||||| || ||||| |||||| |||||| ||||||| ||||| ||||||    
T  8568158 ttggtttggtttggttcggctggtaaaatttaaaccgcaaaccaagcaaaaccattcggttgag-aaaaaaatgatccgaatacatccgaaccaaatgc 8568061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 77 - 267
Target Start/End: Complemental strand, 11834167 - 11833981
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| ||||| | |||||||||||| |||||| |||||||||||||||||| |  ||||||||||||||||| | ||||||||||||||| |||||||    
T  11834167 aaaaaagatgtcatattattaaagtttccattgaatttctatgagtattggtcaagatgatatatatttaattaatatttttcttatattgcggtttggt 11834068  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgcaa 267  Q
    |||||    ||| |||||| ||||||||||||| ||| ||| |||||  |||||||||||  ||||   ||||||| ||||| ||||||||    
T  11834067 ttggt----ttggtaaaatcaaaaccacaaaccgaaccaaatcatgcagttgagtaaaaacatgatatgaatacatccgaaccaaatgcaa 11833981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 27456704 - 27456838
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||| | | || ||| |||||||||||||||||||||| |||| |||||    
T  27456704 agaaaaaatatgtcattttacaaaagttttcattgagtttctatgagtattggtctaggagacatagatttaattagtgtttttcttatgttgcggtttg 27456803  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacc 209  Q
    ||||||||  ||||  ||||| |||||| ||||||    
T  27456804 gtttggttcggttgggaaaatgaaaaccgcaaacc 27456838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 6879803 - 6879695
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| | ||||||||| |||||||||| |||||||||  ||| ||||||    
T  6879803 agaaaaaatatgtcattttattaaagttttcattgagcttctatgagtattagtctaggtgatatatgtttaattagtatttttcttaagttgtagtttg 6879704  T
Q  175 gtttggttt 183  Q
    |||||||||    
T  6879703 gtttggttt 6879695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 7697668 - 7697781
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtc----caagtgatatatatttaatt-agtgtttttcttatattgca 169  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||| ||||||||||||||||||      
T  7697668 agaaaaaatatgtctttttattaaagttttcattgagtttctatgagtattggtctatgtatgtgatatatatttaattaagtgtttttcttatattgtg 7697767  T
Q  170 gtttggtttggttt 183  Q
    ||||||||||||||    
T  7697768 gtttggtttggttt 7697781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 31287483 - 31287295
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcag---- 170  Q
    |||||||||| ||| ||||||||| | ||  ||||| || | ||||||||||||  | |||||| ||||||||||||||||||||||||||||| |        
T  31287483 agaaaaaatacgtcattttattaatgattctattgaattccaatgagtattggtttaggtgatacatatttaattagtgtttttcttatattgcggtttg 31287384  T
Q  171 -tttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaac 258  Q
     ||||||||||||  |||| ||||||||||||| |||||| ||| |||||||||| |||||||||||| |||||  ||||||| |||||    
T  31287383 atttggtttggttcggttggtaaaattaaaaccgcaaaccgaaccaaaccatgcggttgagtaaaaaaatgatctgaatacatccgaac 31287295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 43202791 - 43202954
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||  || ||| |||||||||||||||||| || ||||||||||| |  ||| ||| ||||||||||||||| | |||| |||     ||    
T  43202791 agaaaaaatatgttattatataaaagttttcattgagtttatacgagtattggtctagatgacatagatttaattagtgtttgtattatgttg-----tg 43202885  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    ||||||||| |||| |||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  43202886 gtttggtttggttggtaaaataaaaaccacaaaccaaaccaaaccatgcgattgagtaaaaaagtgatc 43202954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 524574 - 524392
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||  |||||| ||||||| ||||||||||||||||||| ||||| | |||| ||| ||||||||||  ||||| |||| |||| |||||    
T  524574 agaaaaaatatgttattttataaaagtttccattgagtttctatgagtactggtctaggtgacatagatttaattagaattttttttatgttgcggtttg 524475  T
Q  175 gtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||||      |||| |||||| |||||| |||||| ||| |||||||||| ||||| |||||| |||||| |||||||    
T  524474 gtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacat 524392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 26208992 - 26208806
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||| ||||||| |||||| ||||||||| |||| |||||||||||||||||  |  ||| |||||||||| ||||||||||||||  |||| | |||||    
T  26208992 aaaatatatgtcattttataaaagttttcgttgattttctatgagtattggtttagatgacatatatttaactagtgtttttcttacgttgcggcttggt 26208893  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    || |||| |||| |||||| ||| ||||||||  ||| |||||||||| ||||||  |||||| |||| ||||||||| ||| ||||||    
T  26208892 ttagtttggttggtaaaataaaatccacaaactgaaccaaaccatgcggttgagt--aaaatttatccgaatacattcaaaccaaatgc 26208806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 252
Target Start/End: Original strand, 46147602 - 46147763
Alignment:
Q  91 tttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgat 190  Q
    ||||| ||||||| ||| |||||| |||||||||| ||| | || | ||| |||||||||||||||||||||| |||| |||||||||||||| |||| |    
T  46147602 tttataaaagtttccatcgagtttttatgagtatttgtctatgtaacatagatttaattagtgtttttcttatgttgcggtttggtttggtttggttggt 46147701  T
Q  191 aaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    ||||| |||||| ||| || |||||||||||||||| | | |||||| |||||  |||||||    
T  46147702 aaaatgaaaaccgcaatccaaactaaaccatgcgatcgggaaaaaaagtgatctgaatacat 46147763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 35495786 - 35495892
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    ||||||||||| ||||||| ||||||| ||||||| |||||  ||||||| || | |||| |||| |||||||||||||||||||||||||| |||||||    
T  35495786 aaaaaatatgttgttttataaaagtttccattgagattctaaaagtattgatctaggtgacatatgtttaattagtgtttttcttatattgcggtttggt 35495885  T
Q  177 ttggttt 183  Q
    |||||||    
T  35495886 ttggttt 35495892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 29211308 - 29211155
Alignment:
Q  90 ttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttga 189  Q
    |||||| |||||||||||||||||||||||| |||||||| | |||| ||| |||||||||||||||| ||||| | ||      | ||||||| ||||     
T  29211308 ttttataaaagttttcattgagtttctatgaatattggtctaggtgacatagatttaattagtgttttccttatgtcgc------gattggtttggttgg 29211215  T
Q  190 taaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaata 249  Q
    ||||| ||||||  |||||| ||| |||||||||| |||||||||||| |||||| ||||    
T  29211214 taaaagtaaaactgcaaaccaaaccaaaccatgcggttgagtaaaaaagtgatccgaata 29211155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 2734704 - 2734866
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |  ||| ||| ||||||||||  |||||||| | |||  |||||||    
T  2734704 aaaaaatatgtcattttataaaagtattcattgagtttctatgagtattggtctagatgacatagatttaattaggatttttcttgtgttgtggtttggt 2734803  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgat 242  Q
    ||||||   ||  |||   |||||||||||||| |||||||| ||||||| ||| |||||| ||||    
T  2734804 ttggttcgattcgtaa---taaaaccacaaaccgaactaaacaatgcgatcgaggaaaaaagtgat 2734866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 252
Target Start/End: Original strand, 22298908 - 22299089
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc-----a 169  Q
    ||||||||| |||| |||| |||||||||||||||| ||||||||||||||| |  |  ||||| ||||||||||||||||||||||||||| |          
T  22298908 agaaaaaat-tgtcattttgttaaagttttcattgaatttctatgagtattgatttagatgatagatatttaattagtgtttttcttatattacggattg 22299006  T
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||||||||||||  |||| |||||| |||||| |||||| ||| ||| |||||  |||||| ||||| |||| | |||||||    
T  22299007 gtttggtttggttcggttggtaaaatcaaaaccgcaaaccgaaccaaatcatgctgttgagtgaaaaaatgattctaatacat 22299089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 25007640 - 25007742
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||| ||||| |||||||||| |||||||| | |||||||||||||||| | |  ||  ||||||||||||| |||||||||||||||||||||||||    
T  25007640 aaaaaaaatgtcattttattaaaattttcatttaatttctatgagtattggcctagatg--atatatttaattaatgtttttcttatattgcagtttggt 25007737  T
Q  177 ttggt 181  Q
    |||||    
T  25007738 ttggt 25007742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 34751383 - 34751494
Alignment:
Q  90 ttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttga 189  Q
    |||||||||||||| |||||||||| | | ||||||||||   |||||||||||||||||||||||||||  ||||||| ||||| |||||||| ||||     
T  34751383 ttttattaaagtttccattgagtttttttaagtattggtctg-gtgatatatatttaattagtgtttttcgaatattgcggtttgatttggtttggttgg 34751481  T
Q  190 taaaattaaaacc 202  Q
    |||||| ||||||    
T  34751482 taaaatcaaaacc 34751494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 48643163 - 48643264
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||  | |||| |||| ||||||||   |||||||||| |||| |||||    
T  48643163 agaaaaaatatgtcattttat-aaagttttcattgagtttctatgagtattggtataggtgagatatgtttaattaacatttttcttatgttgcggtttg 48643261  T
Q  175 gtt 177  Q
    |||    
T  48643262 gtt 48643264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 31011431 - 31011278
Alignment:
Q  110 agtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacc 209  Q
    ||||||||||| |||||||| |   || |||| ||||||||||||||||||||| |||| ||||||||| |||| |||| |||||| |||||| ||||||    
T  31011431 agtttctatgaatattggtctagacgacatatgtttaattagtgtttttcttatgttgcggtttggtttcgtttggttggtaaaataaaaacctcaaacc 31011332  T
Q  210 taactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaat 263  Q
      || |||||| ||| |||||||| |||  ||||  ||||||| ||||| ||||    
T  31011331 gcaccaaaccacgcggttgagtaagaaaacgatctgaatacatccgaaccaaat 31011278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 47646467 - 47646293
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||| | ||||  || ||| ||| | |||||||||||| ||||     |    
T  47646467 agaaaaaatatgtcattttattaaaatttccatcgagtttctatgagtattggtctaggtgacttagattcaatcaatgtttttcttatgttgc-----g 47646373  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattc 254  Q
    | ||||||  |||  |||||| |||||| |||||| ||| |||  ||  | |||||||||||| ||||||||||||||||    
T  47646372 gattggttcggttagtaaaataaaaaccgcaaaccgaaccaaataatatggttgagtaaaaaagtgatccaaatacattc 47646293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 252
Target Start/End: Original strand, 29628606 - 29628772
Alignment:
Q  91 tttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt-----cg 185  Q
    ||||| ||||||| |||||||||||||| ||| || ||  | |||| |||  ||||||||||||||||||||| |||| ||||||||||||||      |    
T  29628606 tttataaaagtttccattgagtttctatcagtgtttgtgtaggtgacatagctttaattagtgtttttcttatgttgcggtttggtttggtttggttcgg 29628705  T
Q  186 ttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    ||| |||||| |||| | |||||| ||| |||||||||| || || |||||| |||||| |||||||    
T  29628706 ttggtaaaatgaaaatcgcaaaccaaaccaaaccatgcggttaaggaaaaaagtgatccgaatacat 29628772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 11399502 - 11399680
Alignment:
Q  79 aaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatattt-aattagtgtttttcttatattgcagtttg--- 174  Q
    |||||||||| |||||| ||||||| |||||| |||||| || |||||||| | |||| ||| |||| ||||||||||||| ||||  ||| |||||       
T  11399502 aaaatatgtcattttataaaagtttccattgaatttctaagattattggtctaggtgacatagattttaattagtgtttttattatgctgcggtttggtt 11399601  T
Q  175 -gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
     ||||||||  |||  |||||| |||||| |||||| ||  |||||||||| |||| ||||||| |||||| |||||||    
T  11399602 tgtttggttcggttagtaaaatgaaaaccgcaaaccaaatcaaaccatgcggttgactaaaaaagtgatccgaatacat 11399680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 23675771 - 23675838
Alignment:
Q  101 ttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc 168  Q
    ||||||||||||||||||||||||| ||  | |||| ||| |||||||||||||||||||||||||||    
T  23675771 ttttcattgagtttctatgagtattagtttaggtgacataaatttaattagtgtttttcttatattgc 23675838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 38879592 - 38879489
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||||||| |  | ||||||||||||| ||||||    ||| |||| ||||||||||||||||||||| || |||||||    
T  38879592 agaaaaaatatgtcattttataaaagtttccggtaagtttctatgagtgttggtctggatgacatatttttaattagtgtttttcttatgttacagtttg 38879493  T
Q  175 gttt 178  Q
    ||||    
T  38879492 gttt 38879489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 8117989 - 8117880
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    ||||||||||||| || |||||| | ||||| |||||||||| |||||||||||||  | |||||| || ||||||||  ||||||||||| |||| |||    
T  8117989 aaagaaaaaatat-tcattttataagagtttccattgagtttatatgagtattggtttaggtgatacatttttaattaacgtttttcttatgttgcggtt 8117891  T
Q  173 tggtttggttt 183  Q
    || ||||||||    
T  8117890 tgatttggttt 8117880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 16496951 - 16496857
Alignment:
Q  143 tttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||||||| |||    |||||| ||| |||||||| | ||||||||||||    
T  16496951 tttaattagtgtttttcttatattgcggtctagtttggtttggttgataaaataaaagttgcaaaccaaaccaaaccatgtggttgagtaaaaaa 16496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 20482928 - 20482808
Alignment:
Q  132 agtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagt 231  Q
    |||||||||  |||||||||||||| ||||||||||| ||||| || ||||  |||| |||||| ||||||||||||| ||| ||| |||  | ||||||    
T  20482928 agtgatataagtttaattagtgtttctcttatattgcggtttgattcggttgggttgctaaaataaaaaccacaaaccaaaccaaaacatatgtttgagt 20482829  T
Q  232 aaaaaattgatccaaatacat 252  Q
     ||||| ||||  ||||||||    
T  20482828 taaaaaatgatataaatacat 20482808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 30855472 - 30855621
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatatt--gcagtt 172  Q
    |||||||||||||| |||||| ||  ||||| | |||||| |||||||||||||  | |||| |||| |||||| | | |||||||||| ||  ||  ||    
T  30855472 agaaaaaatatgtcattttataaatattttcgtagagtttttatgagtattggtgtaggtgacatatgtttaatcaatatttttcttatgttacgcgctt 30855571  T
Q  173 tggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatg 222  Q
    | ||||||||| |||| |||||| |||||| |||||| ||| ||||||||    
T  30855572 tagtttggtttggttggtaaaatgaaaaccgcaaaccaaaccaaaccatg 30855621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 237
Target Start/End: Complemental strand, 22701039 - 22700880
Alignment:
Q  82 atatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggt 181  Q
    ||||||| |||||| | |||||| ||| | |||||| |||||||| |  | || | ||||||||||||| ||||||| |||| ||||||||||||||| |    
T  22701039 atatgtccttttataacagtttttatttattttctacgagtattgatttatgtaacatatatttaattattgttttt-ttatgttgcagtttggtttgat 22700941  T
Q  182 ttcg-----ttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    || |     ||| |||||| |||| | |||||| ||| ||||||| |||||||||||||||    
T  22700940 ttggttctattggtaaaataaaaatcgcaaaccgaaccaaaccatacgattgagtaaaaaa 22700880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 38903223 - 38903310
Alignment:
Q  98 aagttttcattgagtttctatgagtattggtccaagtg--atatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    |||||||||||||||||||| |||||||  || | |||  |||||| |||||||| |||||||||||| |||| ||||| ||||||||    
T  38903223 aagttttcattgagtttctacgagtatttatctaggtggcatatatgtttaattattgtttttcttatgttgcggtttgatttggttt 38903310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 10338181 - 10338044
Alignment:
Q  139 tatatttaattagtgtttttcttatattgc----------agtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattg 228  Q
    ||||||||||||||||||||||||||||||          |||||||||| |||  |||| |||||| ||||||||||| | ||| |||||||||| |||    
T  10338181 tatatttaattagtgtttttcttatattgcggtttgatttagtttggtttagttcggttggtaaaatcaaaaccacaaatcgaaccaaaccatgcggttg 10338082  T
Q  229 ag--taaaaaattgatccaaatacattcgaacaaaatg 264  Q
    ||   |||||| |||||| ||||||| ||||| |||||    
T  10338081 agcaaaaaaaaatgatccgaatacatccgaaccaaatg 10338044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 16535454 - 16535383
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatattta 146  Q
    |||||||||||||| |||||  ||||||| |||||||||||||| |||||||||| | |||| |||| ||||    
T  16535454 agaaaaaatatgtcattttaaaaaagtttccattgagtttctataagtattggtctaggtgacatatgttta 16535383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 16630208 - 16630279
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatattta 146  Q
    |||||||||||||| |||||  ||||||| |||||||||||||| |||||||||| | |||| |||| ||||    
T  16630208 agaaaaaatatgtcattttaaaaaagtttccattgagtttctataagtattggtctaggtgacatatgttta 16630279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 23033057 - 23033163
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| || |||| | | ||||| | |||||||||||||||||||| || | |||  |||| ||||||||  ||||||||||| |||| |||||    
T  23033057 agaaaaaatatttcattttgtaagagtttccgttgagtttctatgagtattgatcta-gtgtcatatgtttaattaaagtttttcttatgttgcggtttg 23033155  T
Q  175 gtttggtt 182  Q
    ||||||||    
T  23033156 gtttggtt 23033163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 252
Target Start/End: Original strand, 26956234 - 26956390
Alignment:
Q  91 tttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtg-tttttcttatattgcagtttggtttggtttcgttga 189  Q
    ||||| ||||||| |||| |||||||| |||||||||   |  ||| |||||||||||||||| ||||||||||||||     ||||||| ||  ||||     
T  26956234 tttataaaagtttacattaagtttctacgagtattggcgtagctgacatatatttaattagtgttttttcttatattg-----tggtttgattcggttgg 26956328  T
Q  190 taaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    ||||| ||||| |||||||| | | |||||| ||| |||||||||||| |||| | |||||||    
T  26956329 taaaa-taaaaacacaaaccgatccaaaccacgcggttgagtaaaaaagtgattcgaatacat 26956390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 30079254 - 30079189
Alignment:
Q  118 tgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    |||||||||||| | |||| |||||||||||||   |||||||||| |||| ||||||||||||||    
T  30079254 tgagtattggtctaggtgagatatatttaattaacatttttcttatgttgcggtttggtttggttt 30079189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 10338505 - 10338435
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaa 147  Q
    |||||| ||||| |||||||||||||| |||||| ||| || |||||||| || |  ||||||||||||||    
T  10338505 aaaaaaaatgtcattttattaaagtttccattgaatttttacgagtattgatctagatgatatatatttaa 10338435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 35819717 - 35819645
Alignment:
Q  165 ttgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||| |||||||||||||   ||| |||||| |||||| |||||| ||| ||| ||||| |||||||||||||    
T  35819717 ttgctgtttggtttggttcgattggtaaaatcaaaaccgcaaaccaaacaaaatcatgctattgagtaaaaaa 35819645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 37376192 - 37376244
Alignment:
Q  131 aagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    |||||| |||||||||||||   |||||||||| |||| ||||||||||||||    
T  37376192 aagtgagatatatttaattaacatttttcttatgttgctgtttggtttggttt 37376244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 1271510 - 1271618
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  1271510 agaaaaaatatatcattttattaaagtttccattgagtttctatgagtattggtctaagtgatgtatatttaattagtgtttttcttatattgcggtttg 1271609  T
Q  175 gtttggttt 183  Q
    |||||||||    
T  1271610 gtttggttt 1271618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 4785641 - 4785793
Alignment:
Q  110 agtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacc 209  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||| | ||||| ||||||||      |||||| |||||  ||||||    
T  4785641 agtttctatgggtattgatccaggtgatatatatttaattagtgtttttcttacattacggtttgatttggttt-----gtaaaatcaaaactgcaaacc 4785735  T
Q  210 taactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgcaa 267  Q
     ||| |||||||||| |||||||||||||||||||||||||||  |||| ||||||||    
T  4785736 gaaccaaaccatgcggttgagtaaaaaattgatccaaatacatctgaaccaaatgcaa 4785793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 24681791 - 24681598
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||| |||||||||||||| |||||||||| ||| | ||||| || |  ||||||||||||||||||||||||||||||||||  ||||| |    
T  24681791 aaaaaatatgtcattttattaaagtttccattgagtttttataattattgatctagatgatatatatttaattagtgtttttcttatattgtggtttgtt 24681692  T
Q  177 ttggtttcgt-----tgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||||| ||     || |||||| || ||| |||||| ||| ||||||| || ||||| ||||||||||||| ||||||| | ||| ||||||    
T  24681691 ttggtttagttcggctggtaaaatcaagaccgcaaaccgaaccaaaccatacggttgagcaaaaaattgatccgaatacatccaaaccaaatgc 24681598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 22810895 - 22810786
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    ||||||||| ||||| |||||||||| ||| | ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||  ||||    
T  22810895 aagaaaaaaaatgtcattttattaaaatttccgttgagtttctatgagtattggtctagatgatatatatttaattagtgtttttcttatattgtggttt 22810796  T
Q  174 ggtttggttt 183  Q
    | ||||||||    
T  22810795 gatttggttt 22810786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 12193169 - 12193070
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    ||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||| |||| |||||||||||| ||||    
T  12193169 aagaaaaaaaatgtcattttattaaagtttccattgaatttctatgagtattggtctaggtgatatatatttaattaatgttcttcttatattgcggttt 12193070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 12437597 - 12437498
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagttt 173  Q
    ||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||| |||| |||||||||||| ||||    
T  12437597 aagaaaaaaaatgtcattttattaaagtttccattgaatttctatgagtattggtctaggtgatatatatttaattaatgttcttcttatattgcggttt 12437498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 13325678 - 13325836
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtg--atatatatttaattagtgtttttcttatattgcagtt 172  Q
    ||||||||| |||| |||||||||| | | |||||| |||||||||||||||||| |  |   ||||||||||||||| ||||||||||||||||| |||    
T  13325678 agaaaaaat-tgtcattttattaaaatctccattgaatttctatgagtattggtctagatataatatatatttaattattgtttttcttatattgcggtt 13325776  T
Q  173 tggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    ||||||||||     |||||||| |||||| |||||| ||| |||||||||| ||||||||||||    
T  13325777 tggtttggtt-----gataaaatcaaaaccgcaaaccgaaccaaaccatgcggttgagtaaaaaa 13325836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 3155715 - 3155622
Alignment:
Q  90 ttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    |||||| |||||||||||||||||||||||||||||  || | || ||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  3155715 ttttataaaagttttcattgagtttctatgagtatttatctatgttatatatatttaattagtgttttttttatgttgcggtttggtttggttt 3155622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 15452370 - 15452210
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata-tttaattagtgtttttcttatattgcagtttgg 175  Q
    |||||||||||| ||| || ||||| | ||||||||||||||||||||||||| | |||||||| | |||| ||||||||||| |||| |||| ||  ||    
T  15452370 aaaaaatatgtcatttaataaaagtctccattgagtttctatgagtattggtctacgtgatatagattttacttagtgtttttattatgttgcggtgggg 15452271  T
Q  176 tttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaa 236  Q
    |||| ||| |||  |||||| | ||||  ||| | ||| ||||||||||||||||||||||    
T  15452270 tttgatttggttagtaaaatgagaaccgaaaatcaaaccaaaccatgcgattgagtaaaaa 15452210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 12659975 - 12659781
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| ||||||  |||||| |||||||||||||||||||||| |  | |||| |||| |||||||| |||||||| ||| |||  |||||    
T  12659975 agaaaaaatatgtcattttatagaagttt-cattgagtttctatgagtattgatttatgtgacatatgtttaattaatgtttttcctatgttgtggtttg 12659877  T
Q  175 gtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||      |||| ||||||  ||||| |||||  ||| |||||||||| |||||||| |||  ||||| ||||||| ||||| ||||||    
T  12659876 gtttggtttggttcggttggtaaaatagaaaccgcaaactgaaccaaaccatgcggttgagtaagaaaacgatccgaatacatccgaaccaaatgc 12659781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 28441844 - 28441954
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattg-cagt 171  Q
    ||||||| |||||||| |||||| |||||||||||||||||| ||||||||||| || | || |||||||||| |||| | |||||||||||||| | ||    
T  28441844 aaagaaagaatatgtcattttataaaagttttcattgagtttttatgagtattgatctatgttatatatatttgattaat-tttttcttatattgccggt 28441942  T
Q  172 ttggtttggttt 183  Q
    ||||||||||||    
T  28441943 ttggtttggttt 28441954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 11219442 - 11219537
Alignment:
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||||||  |||| |||||| |||||| |||||| ||| |||||||| |||||||||||||| |||||| ||||||| ||||| ||||||    
T  11219442 gtttggtttggttcggttggtaaaatcaaaaccgcaaaccgaaccaaaccatgtgattgagtaaaaaaatgatccgaatacatccgaaccaaatgc 11219537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 27674896 - 27675003
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||||||| || |||||||||||||||||||||| | | || |||| |||||| |   |||||||||| |||| |||||    
T  27674896 agaaaaaatatgtcattttataaaagtttccaatgagtttctatgagtattggtctaggggacatatgtttaatgaacatttttcttatgttgcggtttg 27674995  T
Q  175 gtttggtt 182  Q
    ||||||||    
T  27674996 gtttggtt 27675003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 44024553 - 44024636
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgttttt 158  Q
    |||||||||||||| |||| ||||||||| |||||| ||| |||||||||| ||| | |||||||||||||||||||| |||||    
T  44024553 agaaaaaatatgtcattttgttaaagtttccattgaatttatatgagtattagtctatgtgatatatatttaattagttttttt 44024636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 30942942 - 30943036
Alignment:
Q  80 aaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||| |||||| |||||||||||||||||||||| | ||||  || | |||| |||| |||||||||||||||| ||||||||| |||||    
T  30942942 aaatatgtcattttataaaagttttcattgagtttctataaatattattctaggtgacatatgtttaattagtgttttttttatattgcggtttg 30943036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 28801949 - 28802032
Alignment:
Q  74 aagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttt 157  Q
    ||||||||| ||||| |||||| ||| ||| |||||||||||||| ||||||| || | |||| |||| |||||||||||||||    
T  28801949 aagaaaaaaaatgtcattttataaaaatttacattgagtttctataagtattgatctaggtgacatatgtttaattagtgtttt 28802032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 3129347 - 3129266
Alignment:
Q  102 tttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt 183  Q
    ||||||||| ||| ||| |||||||||| | |||  ||| ||||||||| ||||||||||||||| | ||||||||||||||    
T  3129347 tttcattgaatttatattagtattggtctaggtggcatagatttaattaatgtttttcttatattacggtttggtttggttt 3129266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 12073926 - 12073853
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaat 148  Q
    |||||||||||||| |||| | |||||||||||| ||||| |||||||||||||| | |||| | |||||||||    
T  12073926 agaaaaaatatgtcattttgtaaaagttttcattaagtttttatgagtattggtctaggtgacaaatatttaat 12073853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 9012541 - 9012363
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgt-ttttcttatattgcagttt 173  Q
    |||||| ||||||| |||||| ||||||| |||||||||  | |||||||||||  | || | |||| |||||||||||| |||| |||| |||| ||||    
T  9012541 agaaaatatatgtcattttataaaagtttccattgagttcatttgagtattggtttaggtaacatatgtttaattagtgtttttttttatgttgcggttt 9012442  T
Q  174 ggt-----ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||     ||||||  |||| ||| || |||||| ||||||     |||||||||| |||||||||||| |||||| |||||||    
T  9012441 ggtttgtattggttcggttggtaagatgaaaaccgcaaacc-----aaaccatgcggttgagtaaaaaaatgatccgaatacat 9012363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 11219335 - 11219384
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattg 126  Q
    |||||||||||| ||||||||||||||||||||| ||| || ||||||||    
T  11219335 aaaaaatatgtcattttattaaagttttcattgaatttataagagtattg 11219384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 40436812 - 40436921
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    |||||||||||||||| |||||| ||| ||| |||||||||||||| |||||| ||| |  ||| || | ||||||||     |||||||| ||||| ||    
T  40436812 aaagaaaaaatatgtcattttataaaaatttccattgagtttctataagtatttgtctagatgagatttgtttaattaaaaaatttcttatgttgcaatt 40436911  T
Q  173 tggtttggtt 182  Q
    ||||||||||    
T  40436912 tggtttggtt 40436921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 31477835 - 31477724
Alignment:
Q  154 tttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacatt 253  Q
    |||||||||| || | |||||||||||||  |||| |||||| |||||| |||||| ||| |||||||| | ||||| || ||| |||||| | ||||      
T  31477835 tttttcttatgttacggtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgtggttgagcaagaaaatgatccgattacacc 31477736  T
Q  254 cgaacaaaatgc 265  Q
    ||||| ||||||    
T  31477735 cgaaccaaatgc 31477724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 3155601 - 3155551
Alignment:
Q  215 aaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||| |||||||||||  |||| ||||||||||||||| ||||||    
T  3155601 aaaccatgcgcttgagtaaaaatatgattcaaatacattcgaacgaaatgc 3155551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 41346287 - 41346341
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtc 129  Q
    |||||||| ||||| | |||| |||| || |||||||||||||||||||||||||    
T  41346287 agaaaaaacatgtcatgttataaaagcttccattgagtttctatgagtattggtc 41346341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 4785554 - 4785595
Alignment:
Q  40 taagagttcaagtagtaaataaatacaattttgaaagaaaaa 81  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  4785554 taagagttcaagtagaacataaatacatttttgaaagaaaaa 4785595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 36340392 - 36340320
Alignment:
Q  165 ttgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||| |||||||||||||   ||| |||||| |||||| |||||| ||| ||| ||||| |||||||||||||    
T  36340392 ttgctgtttggtttggttcgattggtaaaatcaaaaccgcaaaccaaacaaaatcatgctattgagtaaaaaa 36340320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 100 - 265
Target Start/End: Original strand, 12884775 - 12884946
Alignment:
Q  100 gttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggttt-----cgttgataaaa 194  Q
    |||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||      |||| |||||    
T  12884775 gtttccattgagtttctataagtattggtctaggtgatatatatttaattagtgtttttcatatattgcggtttggtttggtttggttcagttggtaaaa 12884874  T
Q  195 ttaaaaccacaaacctaactaaaccatgcgattgagt-aaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    | |||||| |||||| ||| ||||||||||||||||| |||||| |||||| |||||||  |||| ||||||    
T  12884875 tcaaaaccccaaaccgaaccaaaccatgcgattgagtaaaaaaaatgatccgaatacatctgaaccaaatgc 12884946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 12041295 - 12041112
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |  ||| ||| |||||||||  ||||||||||| |||| |||||||    
T  12041295 aaaaaatttgtcgttttataaaagttttcattgagtttctatgagtaatggtctagatgacatagatttaattaaagtttttcttatgttgcggtttggt 12041196  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    ||||||     | |||||| |||||| |||||| ||| |||| ||||| |||||||||||| |||||| ||||||| | ||| ||||||    
T  12041195 ttggtt-----ggtaaaatgaaaaccgcaaaccaaaccaaactatgcggttgagtaaaaaagtgatccgaatacatccaaaccaaatgc 12041112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 5862361 - 5862176
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc-----agt 171  Q
    |||||||||||| |||||||||||||||||||||||| |||||   ||||||| | |||||||||     ||||||||||||||||||||||      ||    
T  5862361 aaaaaatatgtcattttattaaagttttcattgagttcctatg---attggtctaggtgatatat-----attagtgtttttcttatattgcggtttggt 5862270  T
Q  172 ttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||||| |||| |||||| ||||||||||||| ||| ||| |||||| |||||||||||| || ||  ||||||| ||||| ||||||    
T  5862269 ttggtttggtttggttggtaaaatcaaaaccacaaaccgaaccaaaacatgcggttgagtaaaaaagtgctctgaatacatccgaaccaaatgc 5862176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 252
Target Start/End: Original strand, 1331385 - 1331545
Alignment:
Q  91 tttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgat 190  Q
    ||||| ||||||| ||||||||| ||||||||||| ||| | || | ||| |||||||||||||||||||||| |||| |||||||||||||  ||||||    
T  1331385 tttataaaagtttccattgagtt-ctatgagtatttgtctatgtaacatagatttaattagtgtttttcttatgttgcggtttggtttggttcagttgat 1331483  T
Q  191 aaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    ||||| |||||  |||||| ||| |||||||| | ||||| |||||| |||||| |||||||    
T  1331484 aaaataaaaacggcaaaccaaaccaaaccatgtggttgaggaaaaaagtgatccgaatacat 1331545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 15320296 - 15320139
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||| | |||||| |||||||||||||||||||||| ||||| |||| | |||| |||| |||||||| |||||||||||| ||||     |    
T  15320296 agaaaaaatatgccattttataaaagttttcattgagtttctataagtatgggtctaggtgacatatgtttaattaatgtttttcttatgttgc-----g 15320202  T
Q  175 gtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    ||||||||  | || |||||| |||||| |||||| ||| |||||||| | ||||||||||||    
T  15320201 gtttggttcagatggtaaaataaaaaccgcaaaccaaaccaaaccatgtggttgagtaaaaaa 15320139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 29172064 - 29172222
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||| ||| | |||||||| |||||||||||||||||| | |||| ||| |  ||  ||||||||||||| || ||||||||||||||||||| ||    
T  29172064 aaaaaataagtcatattattaaaattttcattgagtttctataattattagtctatatg--atatatttaattattg-ttttcttatattgcagtttagt 29172160  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaat 238  Q
    ||||||  |||| |||||| |||||  |||||| ||  |||||||||| |||||||||||||    
T  29172161 ttggttcagttggtaaaatcaaaacttcaaaccaaatcaaaccatgcggttgagtaaaaaat 29172222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 13194281 - 13194387
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||||||||| |||||| ||||||| |||||| |||||||||||||||||| | |||  |||||||||||||  ||||||||||| |||  |||||    
T  13194281 agaaaaaatatgtcattttataaaagtttccattgattttctatgagtattggtctaggtg--atatatttaattaaagtttttcttatgttgtggtttg 13194378  T
Q  175 gtttggttt 183  Q
    |||||||||    
T  13194379 gtttggttt 13194387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 267
Target Start/End: Complemental strand, 36500334 - 36500135
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata-tttaattagtgtttttcttatattgcagttt 173  Q
    |||| ||||||| | |||||| |||||||||||||||||||||| |||||| ||| | |||| ||  | ||||||||||||||||  ||| |||| ||||    
T  36500334 agaacaaatatgccattttataaaagttttcattgagtttctattagtattagtctaggtgacatcgattttaattagtgtttttgctatgttgcggttt 36500235  T
Q  174 ggtttggttt------cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgcaa 267  Q
    | ||||||||       |||| |||||| ||||||  ||||| ||| |||| ||||| |||||||||||| |||||| ||||||| | ||||||||||||    
T  36500234 gatttggtttggttcgggttggtaaaataaaaaccgaaaaccaaaccaaactatgcggttgagtaaaaaaatgatccgaatacatccaaacaaaatgcaa 36500135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 11678441 - 11678540
Alignment:
Q  155 ttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattc 254  Q
    |||||||||||||| |||||||||||||| |||| |||||| |||||| |||||| ||| |||||||||| | | ||||||||||||| | |||||||||    
T  11678441 ttttcttatattgcggtttggtttggtttggttggtaaaatcaaaaccgcaaaccaaaccaaaccatgcggtcgcgtaaaaaattgatacgaatacattc 11678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 11695919 - 11696022
Alignment:
Q  155 ttttcttatattgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattc 254  Q
    |||||||||||||| |||||||||||||| |||| |||||| |||||| |||||| ||| |||||||| | |  |||||||||||||| | |||||||||    
T  11695919 ttttcttatattgcggtttggtttggtttggttggtaaaatcaaaaccgcaaaccgaaccaaaccatgtggtcaagtaaaaaattgatacgaatacattc 11696018  T
Q  255 gaac 258  Q
    ||||    
T  11696019 gaac 11696022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 27301174 - 27301026
Alignment:
Q  99 agttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaa 198  Q
    ||||| ||| |||||||||||||||||| || | |||| ||  ||||||||| | |||||||||| |||| ||||||||||||||      |||||| ||    
T  27301174 agtttccatggagtttctatgagtattgatctaggtgacatgaatttaattaatatttttcttatgttgctgtttggtttggttt-----gtaaaatgaa 27301080  T
Q  199 aaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacat 252  Q
    |||| |||||| ||| |||||||||| ||||| |||||| |||||| |||||||    
T  27301079 aaccgcaaaccaaaccaaaccatgcggttgaggaaaaaagtgatccgaatacat 27301026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 41166531 - 41166704
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||||| ||||| |||||| |||   |||||||||||||||||| |||||||| | |||| ||| |||||||||||| |||| |||| |||  |||||    
T  41166531 agaaaaaacatgtcattttataaaaaaattcattgagtttctatgaatattggtctaggtgacataaatttaattagtgcttttattatgttgtggtttg 41166630  T
Q  175 gtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatc 243  Q
    |||||||||      |||| |||||| |||||| |||||| ||  |||||||||| |||||| ||||| |||||    
T  41166631 gtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaatcaaaccatgcggttgagtgaaaaagtgatc 41166704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 44085864 - 44086020
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    |||||||||||||||| |||||| |||||||  ||||| |||| | ||||||||||| | |||| |||| ||||||||   |||||||||| |||| |||    
T  44085864 aaagaaaaaatatgtcattttataaaagtttcaattgaatttccacgagtattggtctaggtgagatatttttaattaacatttttcttatgttgcggtt 44085963  T
Q  173 tggtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcg 224  Q
    |||||||||||      |||| | |||| ||||||||||||| ||| ||||||||||    
T  44085964 tggtttggtttggttcggttggtgaaatgaaaaccacaaaccaaaccaaaccatgcg 44086020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 11051112 - 11050977
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgt-ttttcttatattgcagttt 173  Q
    |||||||| ||||| ||| || |||||||| ||||||||| ||  |||||||||| |||||| ||| ||||||||||||| ||||||||| |  ||||||    
T  11051112 agaaaaaacatgtcatttcataaaagtttttattgagtttttaaaagtattggtctaagtgacatagatttaattagtgttttttcttatgtcacagttt 11051013  T
Q  174 ggtttggtttcgttgataaaattaaaaccacaaacc 209  Q
    |||||||||   ||  |||||| |||||||||||||    
T  11051012 ggtttggttcaattagtaaaataaaaaccacaaacc 11050977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 22014339 - 22014424
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttat 163  Q
    ||||||||||| |||||| ||||||| ||||||| |||||||||||||| || |  ||| ||| ||||||||| ||||||||||||    
T  22014339 aaaaatatgtcattttataaaagtttccattgagattctatgagtattgatctagatgacataaatttaattaatgtttttcttat 22014424  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 31719786 - 31719677
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatata-tttaattagtgtttttcttatattgcagttt 173  Q
    |||||||||||||| |||||  ||||||| || ||||||||||| |||||||||| | || | ||||| ||||||||||| |||| |||| |||| ||||    
T  31719786 agaaaaaatatgtcattttacaaaagtttccactgagtttctataagtattggtctaggtaacatatattttaattagtggttttattatgttgcggttt 31719687  T
Q  174 ggtttggttt 183  Q
    | ||||||||    
T  31719686 gatttggttt 31719677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 263
Target Start/End: Complemental strand, 11377335 - 11377175
Alignment:
Q  103 ttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaacc 202  Q
    |||||||| |||| || ||||||| || | ||||||||| ||||||||||||||||||||| || | |||||||||| ||   ||| |||||| |||| |    
T  11377335 ttcattgaatttcgataagtattgatctacgtgatatatgtttaattagtgtttttcttattttacggtttggtttgattcgattggtaaaataaaaatc 11377236  T
Q  203 acaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaat 263  Q
      ||||  ||  |||| || || |||||||||||| |||||| ||||||| ||||| ||||    
T  11377235 gtaaactgaatcaaactatacggttgagtaaaaaagtgatccgaatacatccgaaccaaat 11377175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 27898712 - 27898878
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttggt 176  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||| || | ||||  ||| ||| ||||   || ||||| | |||  |||| ||    
T  27898712 aaaaaatatgtaattttataaaagttttcattgagtttctatgagtattgatctaggtgacttatgttt-attaacattattcttgtgttgtggtttagt 27898810  T
Q  177 ttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatcc 244  Q
    ||||||| |||| |||||| ||||  ||||||| ||  |||||||||  |||||||| ||| ||||||    
T  27898811 ttggtttagttggtaaaatgaaaattacaaaccaaatcaaaccatgcagttgagtaagaaaatgatcc 27898878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 10242456 - 10242349
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    ||||||||||| || |||||| |||||||  |||||||||||||||||| || |  || ||| || | ||| |||| | |||||||||| |||| |||||    
T  10242456 agaaaaaatatatcattttataaaagtttcaattgagtttctatgagtactgatttaactgacatgtttttgattaatatttttcttatgttgctgtttg 10242357  T
Q  175 gtttggtt 182  Q
    ||||||||    
T  10242356 gtttggtt 10242349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 27962333 - 27962225
Alignment:
Q  133 gtgatatatatttaattagtgtttttcttatattgcagtttggtttggtttcgttgataaaattaaaac-----cacaaacctaactaaaccatgcgatt 227  Q
    |||| ||| ||||||||| |||||| ||||| ||||||||| ||||||||| ||||||||||| |||||     | |||||| ||| |||||||||| ||    
T  27962333 gtgacatagatttaattaatgtttt-cttatgttgcagtttagtttggtttggttgataaaataaaaactgcaacccaaaccaaaccaaaccatgcggtt 27962235  T
Q  228 gagtaaaaaa 237  Q
    || |||||||    
T  27962234 gaataaaaaa 27962225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 11678377 - 11678417
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctat 118  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  11678377 aaaaatatgtcattttattaaagtttgcattgagtttctat 11678417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 11695855 - 11695895
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagtttctat 118  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  11695855 aaaaatatgtcattttattaaagtttgcattgagtttctat 11695895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 12841719 - 12841827
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtttg 174  Q
    |||||| ||||||| |||||| | ||||| |||||| | | ||| |||||||||| | |||| |||| ||||||||   |||||||||| |||| || ||    
T  12841719 agaaaatatatgtcattttataacagtttccattgaatatatataagtattggtctacgtgagatatgtttaattaacatttttcttatgttgcggtgtg 12841818  T
Q  175 gtttggttt 183  Q
    |||||||||    
T  12841819 gtttggttt 12841827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 1536964 - 1537012
Alignment:
Q  77 aaaaaatatgtcgttttattaaagttttcattgagtttctatgagtatt 125  Q
    |||||||||||| |||||| |||||||| |||||||| ||| |||||||    
T  1536964 aaaaaatatgtcattttataaaagtttttattgagttcctacgagtatt 1537012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 26242 - 26432
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgc-----a 169  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| | |||| |||      |||||  |||||||||| ||||          
T  26242 agaaaaaatatgtcattttataaaagtttccattgagtttctatgagtattggtctaggtgacata-----gattagaatttttcttatgttgcggtttt 26336  T
Q  170 gtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaattgatccaaatacattcgaacaaaatgc 265  Q
    |||||||||||||  |||| |||||| |||||| |||||| ||| |||||||||| ||||| |||||| |||||| ||||||| | ||| ||||||    
T  26337 gtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatccaaactaaatgc 26432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 14901 - 15062
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatattt-aattagtgtttttcttatattgcagttt 173  Q
    ||||||||||| || |||||| ||||||| | |||| ||| |||||||||||||| | |||| ||| |||| ||||| ||||||| |||| |||| ||||    
T  14901 agaaaaaatatatctttttataaaagtttccgttga-tttgtatgagtattggtctaggtgacataaattttaattattgtttttattatgttgcggttt 14999  T
Q  174 ggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaa 236  Q
    |||||||||  |||| |||||| |||||| || ||| ||| |||| ||||| |||||||||||    
T  15000 ggtttggttcggttggtaaaatgaaaaccgcagaccaaaccaaactatgcggttgagtaaaaa 15062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 6358 - 6446
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttat 163  Q
    |||||||||||||| | ||||  ||||||||||| |||||||||||||||||||  | |||| |||| |||||||||||||||||||||    
T  6358 agaaaaaatatgtcatgttatagaagttttcattaagtttctatgagtattggtttaggtgacatatgtttaattagtgtttttcttat 6446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 1550 - 1712
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattg-----agtttctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgca 169  Q
    |||||||||||||| |||||| |||||||||||||     ||||||||||| |||||||| |    | |||| ||||||||||||||||||||| |||      
T  1550 agaaaaaatatgtcattttataaaagttttcattgagtttagtttctatgaatattggtctagacaacatatgtttaattagtgtttttcttatgttgtg 1649  T
Q  170 gtttggtttggttt-----cgttgataaaattaaaaccacaaacctaactaaaccatgcgatt 227  Q
    ||||||||||||||      |||| |||||| |||||| |||||| ||| |||||||| ||||    
T  1650 gtttggtttggtttgattcggttggtaaaataaaaaccgcaaaccaaaccaaaccatgagatt 1712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 3146 - 3256
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagttt-----ctatgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcagtt 172  Q
    ||||||||||| |||||| ||||||||||||||||||     |||||| |||||||  |    |||||| ||||||||||||||||||||| |||  |||    
T  3146 aaaaatatgtcattttataaaagttttcattgagtttagtttctatgaatattggtttagacaatatatgtttaattagtgtttttcttatgttgtggtt 3245  T
Q  173 tggtttggttt 183  Q
    |||||||||||    
T  3246 tggtttggttt 3256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 8119 - 8158
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagttt 114  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  8119 agaaaaaatatgtcattttataaaagttttcattgagttt 8158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 4813 - 4849
Alignment:
Q  78 aaaaatatgtcgttttattaaagttttcattgagttt 114  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  4813 aaaaatatgtcattttataaaagttttcattgagttt 4849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 428022 - 428107
Alignment:
Q  75 agaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaattagtgtttttct 160  Q
    |||||||||||||| |||||| ||||||||||||||||||  ||||||||||||  | |||| |||| |||||||| | |||||||    
T  428022 agaaaaaatatgtcattttataaaagttttcattgagttttaatgagtattggtttatgtgacatatgtttaattattatttttct 428107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 20340 - 20266
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaa 147  Q
    ||||||||||||| || ||||||||||| || ||||||||||| |||| |||||||  |  ||||||||||||||    
T  20340 aaagaaaaaatatatcattttattaaaggttacattgagtttccatgaatattggtttagatgatatatatttaa 20266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 28232 - 28158
Alignment:
Q  73 aaagaaaaaatatgtcgttttattaaagttttcattgagtttctatgagtattggtccaagtgatatatatttaa 147  Q
    ||||||||||||| || ||||||||||| || ||||||||||| |||| |||||||  |  ||||||||||||||    
T  28232 aaagaaaaaatatatcattttattaaaggttacattgagtttccatgaatattggtttagatgatatatatttaa 28158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 62850 - 62922
Alignment:
Q  165 ttgcagtttggtttggtttcgttgataaaattaaaaccacaaacctaactaaaccatgcgattgagtaaaaaa 237  Q
    |||| |||||||||||||   ||| |||||| |||||| |||||| ||| ||| ||||| |||||||||||||    
T  62850 ttgctgtttggtttggttcgattggtaaaatcaaaaccgcaaaccaaacaaaatcatgctattgagtaaaaaa 62922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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