View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_low_5 (Length: 395)
Name: NF5930_low_5
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 38117193 - 38117538
Alignment:
| Q |
17 |
aataatcaggtaaaaagtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcattttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117193 |
aataatcaggtaaaaagtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcattttt |
38117292 |
T |
|
| Q |
117 |
attgggctgtgcttgactgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117293 |
attgggctgtgcttgactgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtga |
38117392 |
T |
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| Q |
217 |
tggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117393 |
tggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatg |
38117492 |
T |
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| Q |
317 |
gtaaaaagatgcagtagtagtccaaccttttccccccaaaatgtta |
362 |
Q |
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| T |
38117493 |
gtaaaaagatgcagtagtagtccaaccttttccccccaaaatgtta |
38117538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 38161021 - 38161148
Alignment:
| Q |
19 |
taatcaggtaaaaagtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttat |
118 |
Q |
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| T |
38161021 |
taatcaggtaaagagtatacttcgatagaagatgtgtgaatgtgccaactctgggaatacttaggttgttttggatcattaatatccaattcatttctgt |
38161120 |
T |
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| Q |
119 |
tgggctgtgcttgactgtttatcattag |
146 |
Q |
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| T |
38161121 |
tgggctgtgttttacggtttatcattag |
38161148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 335
Target Start/End: Original strand, 38161156 - 38161308
Alignment:
| Q |
176 |
tgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacg |
275 |
Q |
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||||||||| ||| |||||| |||||||||||| || || |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |
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| T |
38161156 |
tgagtcatggcatttggttactcttgttggaggtagtgtaatagtaatgacagataaatctgtagcattttagtttgagggctggcatttca-gaa---- |
38161250 |
T |
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| Q |
276 |
agtacaggaccg-tgtttcttgaattctgtaagtgctgcatggtaaaa-agatgcagtagta |
335 |
Q |
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||| |||| ||||||||||||| |||||||| |||||||||||| ||||||||||||| |
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| T |
38161251 |
---acaagaccaatgtttcttgaattatgtaagtg-tgcatggtaaaagagatgcagtagta |
38161308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 38139672 - 38139721
Alignment:
| Q |
290 |
tttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
339 |
Q |
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||||||||||| | |||||||||||||||||||||||||||| |||||| |
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| T |
38139672 |
tttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
38139721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 49004999 - 49005245
Alignment:
| Q |
21 |
atcaggtaaaaagtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattg |
120 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
49004999 |
atcaggtaaaaagtatactttgataaaacaggtgtgaatgtgctaactctgggaatacttgggctgtcttggatcattaatatccaattcatttctattg |
49005098 |
T |
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| Q |
121 |
ggctgtgcttgactgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggt |
220 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| || || |
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| T |
49005099 |
ggctgtgtttgactgtttatcattagattaaactttacttgaaaatatgtaatcatcattcatgacatttggttaaaattgttggaggtatggtaatagt |
49005198 |
T |
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| Q |
221 |
aatgacagataaatctgtagcattttagcttgagggatggcatttca |
267 |
Q |
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|||||||||||||||| |||||| |||| |||| ||||||||||||| |
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| T |
49005199 |
aatgacagataaatctatagcatcttagtttgaaggatggcatttca |
49005245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 362
Target Start/End: Original strand, 49005279 - 49005318
Alignment:
| Q |
323 |
agatgcagtagtagtccaaccttttccccccaaaatgtta |
362 |
Q |
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||||||||||||||||||||||||| ||||| |||||||| |
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| T |
49005279 |
agatgcagtagtagtccaacctttttccccctaaatgtta |
49005318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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