View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5930_low_6 (Length: 385)
Name: NF5930_low_6
Description: NF5930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5930_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 41487173 - 41486799
Alignment:
| Q |
11 |
cacagacaactgacaagactatgacatataacgtgtcaaactccgaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcat |
110 |
Q |
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| T |
41487173 |
cacaaacaactgacaagactatgacatataacgtgtcaaactcggaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcat |
41487074 |
T |
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| Q |
111 |
agcttattttcacccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcttggctaaaggcatacaccctaggtact |
210 |
Q |
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| T |
41487073 |
agcttattttcacccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcctggctaaaggcatacaccctaggtact |
41486974 |
T |
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| Q |
211 |
ctcataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaa |
310 |
Q |
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| T |
41486973 |
cttataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaa |
41486874 |
T |
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| Q |
311 |
ataaggaaaacttaagataatcactgtcacaaaaaatatctgatgtactttagaggattgaactggtacacagag |
385 |
Q |
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| T |
41486873 |
ataaggaaaacttaagataatcactgtcacaaaaaatatctgatgtactttagaggattgaactggtacacagag |
41486799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 41488896 - 41488768
Alignment:
| Q |
211 |
ctcataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaattta---tagaaatattaaatgtctaaaatcatg |
307 |
Q |
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| T |
41488896 |
ctcataaatctatagtaacgcaacatatagacatcaattgcagtattttagaaattactgggaaaatgtacagaagaaatactagatgactaaaatcatg |
41488797 |
T |
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| Q |
308 |
caaataaggaaaacttaagataatcactg |
336 |
Q |
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| T |
41488796 |
caaataagcaaaatttaagataattactg |
41488768 |
T |
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