View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931-Insertion-3 (Length: 475)
Name: NF5931-Insertion-3
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931-Insertion-3 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 22 - 475
Target Start/End: Original strand, 15138186 - 15138639
Alignment:
| Q |
22 |
gaaccttagctgctgctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgcgccaccgtcat |
121 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15138186 |
gaaccttagctgccactccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgcgccaccatcat |
15138285 |
T |
|
| Q |
122 |
accctttttcctgttgtgctccttttgtctgtcatgctcgtcgattcagtcgttgttcgcaaatttgatggttgactccttgctagatgtgagggttgtg |
221 |
Q |
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|| ||| ||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||| |
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| T |
15138286 |
acacttcttcctatggcgctccttttgtctgtcatgctcgtcgattccgtcgttgttcgcaaatttgatggttgactccttgccaaaggtgagggttgtg |
15138385 |
T |
|
| Q |
222 |
ttgcttcggtcgttgggtctttagccactgcctccgttcatatcgacggtgttgcagctcgtgcttgtgtccgaacgatggttttgaacctaggaagtcc |
321 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15138386 |
ttgcttcggtcgttgggtctttagccactgccgccgttcatatcgacgatgttgcagctcgtgcttgtgtccgaacgatggttttgaacctaggaagtct |
15138485 |
T |
|
| Q |
322 |
ggcgctgcctttctcacggtggttgtttgcttttttatgggttgttcgtgattcaataccggaagtcggttctgattcattcctgatctgggtttgaagt |
421 |
Q |
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||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||| |||| || || ||||||||||||||||||||||||| |
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| T |
15138486 |
ggcgctgcctttctcgtggtggttgttttctcttttatgagttgttcgtgattcaataccggaggtcgattttgcttcattcctgatctgggtttgaagt |
15138585 |
T |
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| Q |
422 |
tggaagtcaaattcggatcattccgggtttgagttgtgttcatgtgcctcaatc |
475 |
Q |
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| T |
15138586 |
tggaagtcaaatccggatcattccgggtttgagttgtgttcacgtgcctcaatc |
15138639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 20735842 - 20736307
Alignment:
| Q |
11 |
ccgccgccccggaaccttagctgctgctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgagga-gagtgtttctccg |
109 |
Q |
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|||| ||||| ||||||||| || |||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||| | || ||||||| || |
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| T |
20735842 |
ccgctgcccctgaaccttagatgtcgctctttccttttccaatctcaaccaccatgatgtagatctaggagatgttggtgcgagaaagaatgtttcttcg |
20735941 |
T |
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| Q |
110 |
cgccaccgtcataccctttttcctgttgtgctccttttgtctgtcatgctcgtcgattcagtcgttgttcgcaaatttgatggttgactccttgctagat |
209 |
Q |
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| T |
20735942 |
cgccaccgtcacacccttcttcatctggcgctcctttcgtctgtcatgctcgtcgattctgtcgtcgttcacagaaaagatggttggctccttgccagag |
20736041 |
T |
|
| Q |
210 |
gtgagggttgtgttgcttcggtcgttgggtctttagccactgcctccgttcatatcgacggtgttgcagctcgtgcttgtgtccgaacgatggttttgaa |
309 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||| |||||||| ||||||| |
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| T |
20736042 |
gtgagggttgtgttccttcggtcgttgggtctttagccactgctgccgttcataatgaaagtgttgcatctcgtgcttgtgtctgaacgatgtttttgaa |
20736141 |
T |
|
| Q |
310 |
cctaggaagtccggcgctgcctttctcacggtggttgtttgcttttttatgggttgttcgtgattcaataccggaagtcggttctgattcattcctgatc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||| ||| ||| ||| |||| ||||| ||||||||||||| |
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| T |
20736142 |
cctaggaagtccggcgctgcctttctcacggtggttgttggctcttctatgggttgtttgtga-tcattacgggaggtcgattctgcttcattcctgatc |
20736240 |
T |
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| Q |
410 |
tgggtttgaagttggaagtcaaa-ttcggatcattccgggtttgagttgtgttcatgtgcctcaatc |
475 |
Q |
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| T |
20736241 |
taggtttgaagttggaagtcaaatttcggatcattctgggtttgagttgtgttcgtgtgcctcaatc |
20736307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 20743386 - 20743660
Alignment:
| Q |
16 |
gccccggaaccttagctgctgctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgagga-gagtgtttctccgcgcca |
114 |
Q |
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||||| |||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||| || ||||||| ||||||| |
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| T |
20743386 |
gcccctgaaccttagctgtcgctctttccttttccaatctcagacaccatgatgtagatctaggagatggtggtgtgaggaagaatgtttcttcgcgcca |
20743485 |
T |
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| Q |
115 |
ccgtcataccctttttcctgttgtgctccttttgtctgtcatgctcgtcgattcagtcgttgttcgcaaatttgatggttgactccttgctagatgtgag |
214 |
Q |
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| T |
20743486 |
ccgtcacacccttcttcctctggcgctcctttcgtctatcatgctcgtcgattccgtcgtcgttcgccgaaaagatggttggctccttgcgtgaggtaag |
20743585 |
T |
|
| Q |
215 |
ggttgtgttgcttcggtcgttgggtctttagccactgcctccgttcatatcgacggtgttgcagctcgtgcttgt |
289 |
Q |
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| T |
20743586 |
ggttgtgttgcttcggtcgttggatctttagccactgccgccgttcatatcgacggtgttgcagctcgtgcttgt |
20743660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 285 - 474
Target Start/End: Original strand, 20745807 - 20745996
Alignment:
| Q |
285 |
cttgtgtccgaacgatggttttgaacctaggaagtccggcgctgcctttctcacggtggttgtttgcttttttatgggttgttcgtgattcaataccgga |
384 |
Q |
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|||||||| |||||||| |||||||||| ||||||| || || ||||||||||||||||||||| ||| || ||||||||||| |||||||| ||| ||| |
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| T |
20745807 |
cttgtgtctgaacgatgtttttgaacctgggaagtctggtgccgcctttctcacggtggttgttggctcttctatgggttgtttgtgattcattacggga |
20745906 |
T |
|
| Q |
385 |
agtcggttctgattcattcctgatctgggtttgaagttggaagtcaaattcggatcattccgggtttgagttgtgttcatgtgcctcaat |
474 |
Q |
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|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
20745907 |
ggtcggttctgcttcatgcctgagctgggtttgaagttggaagtcaaattcggatcattccgggtttgaattgtgttcgtgtgcctcaat |
20745996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 17665307 - 17665251
Alignment:
| Q |
54 |
ctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgc |
110 |
Q |
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|||| ||||||||||||||||| | |||||||| ||||||||||| ||||||||| |
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| T |
17665307 |
ctcaaccaccacgatgtagatccgggagatggtgatgcgaggagagcttttctccgc |
17665251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 3733204 - 3733392
Alignment:
| Q |
36 |
gctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgcgccaccgtcataccctttttcctgt |
135 |
Q |
| |
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| T |
3733204 |
gctcctcccttttccaatctcagccaccacgatgtagatttaggagatggtggtgcgaggagagcttttctccgcaccaccgtcacacccttcctccttt |
3733303 |
T |
|
| Q |
136 |
tgtgctccttttgtctgtcatgctcgtcgattcagtcgttgttcgcaaatttgatggttgactccttgctagatgtgagggttgtgttg |
224 |
Q |
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| T |
3733304 |
ggcgctcccttcgtctttcgtgttcgtcgattccttcgttgtttgcaggtttgatggttggttccttgccggaggttagggttgtgttg |
3733392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 8770426 - 8770318
Alignment:
| Q |
277 |
agctcgtgcttgtgtccgaacgatggttttgaacctaggaagtccggcgctgcctttctcacggtggttgtttgcttttttatggg-ttgttcgtgattc |
375 |
Q |
| |
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||||||||||||||||||||| ||| ||||||| | ||||||||| ||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
8770426 |
agctcgtgcttgtgtccgaacattgggtttgaacatgggaagtccgacgccgcctttctcacggtggttgttggctcttttatgggtttgttcgtgattc |
8770327 |
T |
|
| Q |
376 |
aataccgga |
384 |
Q |
| |
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| ||||||| |
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| T |
8770326 |
actaccgga |
8770318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 8770263 - 8770195
Alignment:
| Q |
406 |
gatctgggtttgaagttggaagtcaaattcggatcattccgggtttgagttgtgttcatgtgcctcaat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||| || | ||||||||| |
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| T |
8770263 |
gatctgggtttgaagttggaagtcaaatccggatcattctaggtttgagttgtgctcctatgcctcaat |
8770195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 472
Target Start/End: Original strand, 3734800 - 3734871
Alignment:
| Q |
401 |
ttcctgatctgggtttgaagttggaagtcaaattcggatcattccgggtttgagttgtgttcatgtgcctca |
472 |
Q |
| |
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|||| |||||||||||||||||| ||||||||| |||||||||| |||||||| |||| || ||||||||| |
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| T |
3734800 |
ttccagatctgggtttgaagttgtaagtcaaatccggatcattctgggtttgaattgttttattgtgcctca |
3734871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 23441020 - 23441076
Alignment:
| Q |
414 |
tttgaagttggaagtcaaattcggatcattccgggtttgagttgtgttcatgtgcct |
470 |
Q |
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||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||| |
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| T |
23441020 |
tttgaagtttgaagtcgaattcggatcattctgagtttgagttgtgttattgtgcct |
23441076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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