View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931-Insertion-5 (Length: 447)
Name: NF5931-Insertion-5
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 447
Target Start/End: Complemental strand, 47654269 - 47653829
Alignment:
| Q |
7 |
cacaattgaccgaattttattaccaaacttcgtttatctattgtttacggttgccgtttaattttcctttcataattggttgttgttctaacagtttaat |
106 |
Q |
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| T |
47654269 |
cacaattgaccgaattttattaccaaactttgtttatctattgtttacggttgccgtttaatttccctttcataattggttgttgttctaacagtttatt |
47654170 |
T |
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| Q |
107 |
tatgttggagatttatgaagagcgccgaaaataacaacaaaccaatgatctaggattacgagatcaaaaatcacatctccatataaaatctcaatgcatt |
206 |
Q |
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| T |
47654169 |
tatgttggagatttatgaagagcgccgaaaataacaacaaaccaacgatctaggattacgagatcaaaaatcatgtctccatataaaatctcaatgcatt |
47654070 |
T |
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| Q |
207 |
gggtatatgagtcttctcttgtatatatccgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtcaacaatcttccctcaa |
306 |
Q |
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| T |
47654069 |
gagtatatgagtcttctcttgcatatatctgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtcaacaatcttccctcaa |
47653970 |
T |
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| Q |
307 |
gtgtggagctatatccaatacttgcatcaccattattaccggcataataacatgtctcctgactacactaacatgaagacttttgtagcaagtccaaaca |
406 |
Q |
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| T |
47653969 |
gtgtggacctatatccaatacttgcatcaccattattaccggcataataacatgtcttctgactacactaacatgaagacttttgtagcaagtccaaaca |
47653870 |
T |
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| Q |
407 |
ttgagatattcaatttcgctctctcaccaattaaaacttgg |
447 |
Q |
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| T |
47653869 |
ttgagatattcactttcgctctctcgccaattaaaacttgg |
47653829 |
T |
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