View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931-Insertion-8 (Length: 395)

Name: NF5931-Insertion-8
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931-Insertion-8
NF5931-Insertion-8
[»] chr3 (18 HSPs)
chr3 (139-395)||(50650358-50650614)
chr3 (140-395)||(12938397-12938652)
chr3 (142-389)||(31658792-31659038)
chr3 (140-352)||(29833271-29833483)
chr3 (168-359)||(33216657-33216848)
chr3 (140-229)||(53282148-53282237)
chr3 (140-229)||(36950291-36950380)
chr3 (285-362)||(39833230-39833307)
chr3 (138-228)||(20104175-20104265)
chr3 (140-225)||(29703673-29703758)
chr3 (140-188)||(50360241-50360289)
chr3 (285-389)||(5232946-5233050)
chr3 (285-356)||(29703541-29703612)
chr3 (285-356)||(36950163-36950234)
chr3 (138-228)||(5232799-5232889)
chr3 (140-226)||(39833366-39833452)
chr3 (285-356)||(53282294-53282365)
chr3 (92-136)||(14148426-14148470)
[»] chr4 (15 HSPs)
chr4 (140-395)||(27292942-27293197)
chr4 (140-395)||(4919011-4919265)
chr4 (140-389)||(42976327-42976575)
chr4 (9-136)||(24474355-24474482)
chr4 (140-232)||(24228273-24228365)
chr4 (295-362)||(45989609-45989676)
chr4 (285-362)||(20133410-20133487)
chr4 (295-388)||(42069019-42069112)
chr4 (285-389)||(55919359-55919463)
chr4 (135-229)||(15531344-15531438)
chr4 (295-362)||(47031458-47031525)
chr4 (285-389)||(28679508-28679612)
chr4 (285-356)||(15531216-15531287)
chr4 (140-226)||(20133265-20133351)
chr4 (140-222)||(55919526-55919608)
[»] chr2 (16 HSPs)
chr2 (138-395)||(14096250-14096507)
chr2 (140-244)||(18977203-18977307)
chr2 (272-389)||(18977083-18977200)
chr2 (285-389)||(14810087-14810191)
chr2 (285-389)||(15330735-15330839)
chr2 (285-389)||(37261669-37261773)
chr2 (140-229)||(7089079-7089168)
chr2 (285-389)||(16429864-16429968)
chr2 (285-389)||(17690604-17690708)
chr2 (145-229)||(33755203-33755287)
chr2 (140-228)||(37078802-37078890)
chr2 (285-389)||(37078947-37079051)
chr2 (62-136)||(16592594-16592668)
chr2 (140-226)||(17690459-17690545)
chr2 (285-338)||(7089225-7089278)
chr2 (145-226)||(16429724-16429805)
[»] chr1 (8 HSPs)
chr1 (139-395)||(27286159-27286415)
chr1 (140-392)||(52385783-52386035)
chr1 (141-362)||(39241555-39241773)
chr1 (285-389)||(12981521-12981625)
chr1 (285-389)||(45348240-45348344)
chr1 (295-361)||(45325635-45325701)
chr1 (138-226)||(12981374-12981462)
chr1 (140-211)||(49409760-49409831)
[»] chr7 (12 HSPs)
chr7 (140-395)||(19436668-19436923)
chr7 (140-395)||(29833911-29834166)
chr7 (143-313)||(29258386-29258556)
chr7 (285-389)||(45972423-45972527)
chr7 (295-362)||(6442636-6442703)
chr7 (296-362)||(34094118-34094184)
chr7 (285-362)||(29243380-29243455)
chr7 (137-226)||(45972275-45972364)
chr7 (285-389)||(47327942-47328046)
chr7 (139-228)||(47327796-47327885)
chr7 (140-228)||(29243235-29243323)
chr7 (140-209)||(34093973-34094042)
[»] chr5 (9 HSPs)
chr5 (140-395)||(30624860-30625115)
chr5 (139-395)||(41413409-41413665)
chr5 (138-395)||(1828406-1828663)
chr5 (139-395)||(40313872-40314128)
chr5 (140-359)||(31482071-31482290)
chr5 (285-389)||(24788296-24788400)
chr5 (140-229)||(39884550-39884639)
chr5 (139-226)||(24788459-24788546)
chr5 (285-352)||(39884696-39884763)
[»] chr6 (6 HSPs)
chr6 (145-395)||(12938643-12938893)
chr6 (165-395)||(33694802-33695031)
chr6 (183-362)||(28138039-28138217)
chr6 (142-225)||(12466398-12466481)
chr6 (239-319)||(14532051-14532131)
chr6 (93-134)||(20891400-20891441)
[»] chr8 (8 HSPs)
chr8 (140-359)||(13802682-13802901)
chr8 (235-359)||(23613574-23613699)
chr8 (140-229)||(3879600-3879689)
chr8 (238-359)||(23614215-23614338)
chr8 (285-389)||(531684-531788)
chr8 (285-362)||(30945452-30945527)
chr8 (139-226)||(531538-531625)
chr8 (285-356)||(3879472-3879543)
[»] scaffold0166 (2 HSPs)
scaffold0166 (285-389)||(30679-30783)
scaffold0166 (139-226)||(30842-30929)
[»] scaffold0338 (1 HSPs)
scaffold0338 (95-136)||(18970-19011)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 139 - 395
Target Start/End: Complemental strand, 50650614 - 50650358
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 238  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50650614 tgggagcttctatgaagaagtcggggaattgactttttcggtaaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaca 50650515  T
Q  239 aattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggta 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50650514 aattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggta 50650415  T
Q  339 caccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50650414 caccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 50650358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 140 - 395
Target Start/End: Original strand, 12938397 - 12938652
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    |||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| |||||||||||||||||| ||||||    
T  12938397 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaa 12938496  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||| |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||  ||||| |||||||||| |||||||    
T  12938497 attataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtac 12938596  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    ||||| |||||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  12938597 accctttacacatgatttttcttataattccaaatctctctcctctttatcactca 12938652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 142 - 389
Target Start/End: Complemental strand, 31659038 - 31658792
Alignment:
Q  142 gagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaat 241  Q
    ||||||||||||| |||| | | ||||||||| ||||||| |||||||||||||| ||||||||||||||||  ||||||| ||| |||| || | ||||    
T  31659038 gagcttctatgaaaaagttgaacaattgacttcttcggtgcagtcgtttaattcaaccaatcagatttcaagagatgacacatcacatgtagg-ataaat 31658940  T
Q  242 tctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacac 341  Q
    |||||||||||||||||| | |||| || ||||||||||||||||| ||| | |||||||||||||||||||  |||||||||||||||| |||||||||    
T  31658939 tctaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatcttaacggttagatttacttggtctctatgttattgtggtacac 31658840  T
Q  342 cctctacacatgatttttcttatttttccaattctctttcctctttat 389  Q
    | ||||||||||||||||||| |  |  ||||||||| ||||||||||    
T  31658839 catctacacatgatttttcttctaatatcaattctctctcctctttat 31658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 140 - 352
Target Start/End: Original strand, 29833271 - 29833483
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||| ||||||||| |  || |||||| || ||||||||||||| | | | |||||||||||| |||| ||||||||||||| ||  ||||||    
T  29833271 gggagcttctacgaagaagtcagtaaaatgacttctttggtgaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaaggacaa 29833370  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||| |||||||||||||||| | ||||||||||||||||||||  |||| || | |||||||| ||||||||||||||||| |||||| |||  ||||||    
T  29833371 attataatatggatcacttgctccatatgttccaccatagacagatttacttgatgatcttaatggttagatttgtttggtttctatggtattatggtac 29833470  T
Q  340 accctctacacat 352  Q
    ||| ||| |||||    
T  29833471 accatcttcacat 29833483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 359
Target Start/End: Complemental strand, 33216848 - 33216657
Alignment:
Q  168 tgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatat 267  Q
    |||||| |||||||||||||||| | | |||||||||||||| |||| ||||||||||  | ||   |||||||| |||||||||||||||| | |||||    
T  33216848 tgacttcttcggtgaagtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatgacaaattataatatggatcacttgctccatat 33216749  T
Q  268 gttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgattttt 359  Q
    |||||||||||||||  |||| |||| |||||||| |||||||||||||||| ||||||| |||  ||||||| | ||||| ||| ||||||    
T  33216748 gttccaccatagacagatttacttcatgatcttaatggttagatttgtttggcctctatggtattatggtacagcatctacgcataattttt 33216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 53282148 - 53282237
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 229  Q
    ||||||||||||||||||||| || || |||||| |||||||||||||||| | |  |||||||||||||||||| ||||||||||||||    
T  53282148 gggagcttctatgaagaagtcagaaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagatttcaagtgatgacacgtcagat 53282237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 36950380 - 36950291
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 229  Q
    ||||||||||||||||||||| || ||  |||||||||||||||||||||| | |  |||||| ||||||||||| ||||||||||||||    
T  36950380 gggagcttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagat 36950291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 39833307 - 39833230
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    ||||||||| ||| |||| ||||||||||  ||| |||||||||||| |||||||||| |||||||||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttctt 39833230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 20104175 - 20104265
Alignment:
Q  138 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 228  Q
    ||||||||||||| ||||||||| |  || |||||||||||||||| |||||| | |  ||||||||||||| |||| |||||||||||||    
T  20104175 atgggagcttctacgaagaagtcaggaaaatgactttttcggtgaaatcgtttgaataggccaatcagattttaagtgatgacacgtcaga 20104265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 29703758 - 29703673
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtc 225  Q
    ||||||||||| | ||||||| || || ||||||||||||||||||||||| | |   ||||||||||||||||| ||||||||||    
T  29703758 gggagcttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtc 29703673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 50360289 - 50360241
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgt 188  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  50360289 gggagcttctacgaagaagtcggggaattgactttttcggtgaagtcgt 50360241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 5232946 - 5233050
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||||||||  |||||||||  ||| ||| |||||||| |||||||| | ||||||||||| ||||||| |  | |||||||||| ||||     
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 5233045  T
Q  385 tttat 389  Q
    |||||    
T  5233046 tttat 5233050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 29703612 - 29703541
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatt 356  Q
    ||||||||| |||||||| ||||||||||  || ||||||||||||| |||||| ||  |||||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacatgatt 29703541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 36950234 - 36950163
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatt 356  Q
    ||||||||| |||||||| ||||||||||  |||||||||||||||| |||||| |   |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 36950163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 5232799 - 5232889
Alignment:
Q  138 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 228  Q
    |||| |||||||| ||||||||| |  || |||||| |||||||||||||| | | |  ||||||||||||| |||| |||||||||||||    
T  5232799 atggaagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 5232889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 39833452 - 39833366
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  39833452 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 39833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 53282294 - 53282365
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatt 356  Q
    |||||||||  ||||||| ||||||||||  || ||||||||||||| |||||| ||  |||||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacatgatt 53282365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 14148426 - 14148470
Alignment:
Q  92 gagaaaatggagatgttgcatctaaactctttcgaataattgatt 136  Q
    ||||||||| |||||| |||||||||||||||| || ||||||||    
T  14148426 gagaaaatgaagatgtagcatctaaactctttcaaagaattgatt 14148470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 140 - 395
Target Start/End: Original strand, 27292942 - 27293197
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  27292942 gggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaa 27293041  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27293042 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtac 27293141  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27293142 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 27293197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 140 - 395
Target Start/End: Original strand, 4919011 - 4919265
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4919011 gggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtt-aattcagccaatcagatttcaagccatgacacgtcagatgttgggacaa 4919109  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  4919110 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaatggttagatttgtttggtctctatgatattgtggtac 4919209  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4919210 acgctctacacatgatttttcttatttttccaattctatttcctctttatcactca 4919265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 140 - 389
Target Start/End: Original strand, 42976327 - 42976575
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    |||||||||||||||||||||||| ||||||||| |||| || |||||||||||||| ||||||||||||||||  ||||||||||| |||| |  | ||    
T  42976327 gggagcttctatgaagaagtcggacaattgacttcttcgatgcagtcgtttaattcaaccaatcagatttcaagagatgacacgtcacatgtaga-ataa 42976425  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||| |||||||||||||||| | |||| || ||||||||||||||||| ||| | |||||||||||||||||||  |||||||||||||||  |||||||    
T  42976426 attttaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatcttaacggttagatttacttggtctctatgttaatgtggtac 42976525  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttat 389  Q
    ||| ||||||||||||||||||| |  |  ||||||||| ||||||||||    
T  42976526 accatctacacatgatttttcttctagtatcaattctctctcctctttat 42976575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 24474355 - 24474482
Alignment:
Q  9 ggattaaggcaccggaagccgcatcgatcgcttgagcattgactgtgcgtgattttttataaaaaccaatttatgcataattagagaaaatggagatgtt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  24474355 ggattaaggcaccggaagccgcatcgatcgcttgagcattgactgtgcgtgattttttatgaaaaccaatttatgcataatttgagaaaatgaagatgtt 24474454  T
Q  109 gcatctaaactctttcgaataattgatt 136  Q
    ||||| |||| |||||||||||||||||    
T  24474455 gcatcaaaaccctttcgaataattgatt 24474482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 24228365 - 24228273
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgtt 232  Q
    |||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| ||||||||||||||||||    
T  24228365 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgtt 24228273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 45989676 - 45989609
Alignment:
Q  295 gatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    |||||||||||||||||||  |||||||||||||||| |||||| ||| |||||||||||||||||||    
T  45989676 gatcttaacggttagatttaattggtctctatgttattgtggtataccatctacacatgatttttctt 45989609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 20133410 - 20133487
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    ||||||||| ||| |||| ||||||||||  ||| |||||||||||| |||||||||| |||||||||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttctt 20133487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 42069112 - 42069019
Alignment:
Q  295 gatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctcttta 388  Q
    |||||||||||||||||||  ||| |||||||||||| |||||| ||| ||||||||||||||||||| |  || ||||||| | |||||||||    
T  42069112 gatcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttctaatttcaattctttctcctcttta 42069019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 55919463 - 55919359
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| ||||  |||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 55919364  T
Q  385 tttat 389  Q
    |||||    
T  55919363 tttat 55919359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 15531438 - 15531344
Alignment:
Q  135 ttgatgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 229  Q
    |||| ||||||||||| | ||||||| || || |||||||||| |||||||||||| | | | ||||||||||||||||| |||| |||||||||    
T  15531438 ttgaagggagcttctacggagaagtcagaaaaatgactttttcagtgaagtcgtttgaatgaaccaatcagatttcaagtgatgatacgtcagat 15531344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 47031525 - 47031458
Alignment:
Q  295 gatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    |||||||| ||||||||||  ||| |||||||||||| |||||| ||| |||||||||||||||||||    
T  47031525 gatcttaatggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttctt 47031458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 28679508 - 28679612
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||| | ||||||||  |||| ||||  ||| |||||||||||| |||||| ||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatttttcttctagtaccaattttctctcctc 28679607  T
Q  385 tttat 389  Q
    |||||    
T  28679608 tttat 28679612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 15531287 - 15531216
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatt 356  Q
    ||||||||| |||||||| ||||||||||  || ||||||||||||| |||||| ||  |||||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacatgatt 15531216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 20133265 - 20133351
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  20133265 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 20133351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 55919608 - 55919526
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacac 222  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||    
T  55919608 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacac 55919526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 138 - 395
Target Start/End: Original strand, 14096250 - 14096507
Alignment:
Q  138 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggac 237  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14096250 atgggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggac 14096349  T
Q  238 aaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggt 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  14096350 aaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggt 14096449  T
Q  338 acaccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14096450 acacgctctacacatgatttttcttatttttccaattctatttcctctttatcactca 14096507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 18977307 - 18977203
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||||||||||||| |  || |||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| | | |||    
T  18977307 gggagcttctatgaagaagtcaggaaaatgacttcttcgatgaagtcgtttaattcagccaatcagattttaagtgatgacacgtcacatgtagaggcaa 18977208  T
Q  240 attct 244  Q
    |||||    
T  18977207 attct 18977203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 18977200 - 18977083
Alignment:
Q  272 caccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttcca 371  Q
    |||||| ||||||||||||||| ||||||||| |||||||||  || ||||||||||||| |||||||||| ||||||||| | ||||||| |  | |||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacataacttttcttctagtacca 18977101  T
Q  372 attctctttcctctttat 389  Q
    ||| ||| ||||||||||    
T  18977100 attatctctcctctttat 18977083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 14810191 - 14810087
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| |||| |||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 14810092  T
Q  385 tttat 389  Q
    |||||    
T  14810091 tttat 14810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 15330735 - 15330839
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 15330834  T
Q  385 tttat 389  Q
    |||||    
T  15330835 tttat 15330839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 37261773 - 37261669
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 37261674  T
Q  385 tttat 389  Q
    |||||    
T  37261673 tttat 37261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 7089079 - 7089168
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 229  Q
    ||||||||||||||||||||| || ||  |||||||||| ||||||||||| | |  |||||| ||||||||||| ||||||||||||||    
T  7089079 gggagcttctatgaagaagtcagaaaaacgactttttcgatgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagat 7089168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 16429864 - 16429968
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||  ||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 16429963  T
Q  385 tttat 389  Q
    |||||    
T  16429964 tttat 16429968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 17690604 - 17690708
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||| | ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 17690703  T
Q  385 tttat 389  Q
    |||||    
T  17690704 tttat 17690708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 33755287 - 33755203
Alignment:
Q  145 cttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 229  Q
    |||||||||||||||| || ||  |||||||||||||||||||||| | |  | |||| ||||||||||| ||||||||||||||    
T  33755287 cttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggtcaattagatttcaagtgatgacacgtcagat 33755203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 37078802 - 37078890
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 228  Q
    ||||||||||| ||||||||| |  || |||||| |||||||||||||| | | |  ||||||||||||| |||| |||||||||||||    
T  37078802 gggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 37078890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 37078947 - 37079051
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||||||||  |||||||||  ||| ||| |||||||| |||||||| | ||||||||||| ||||||| |  | |||||||||| ||||     
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 37079046  T
Q  385 tttat 389  Q
    |||||    
T  37079047 tttat 37079051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 16592594 - 16592668
Alignment:
Q  62 tttttataaaaaccaatttatgcataattagagaaaatggagatgttgcatctaaactctttcgaataattgatt 136  Q
    ||||||| ||||  || ||||||||  || |||||||||  ||||| ||||||||||||||||||||||||||||    
T  16592594 tttttatgaaaataaagttatgcatgttttgagaaaatgatgatgtagcatctaaactctttcgaataattgatt 16592668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 17690459 - 17690545
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    |||||||||||||| ||| || |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  17690459 gggagcttctatgatgaactcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 17690545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 7089225 - 7089278
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggta 338  Q
    ||||||||| |||||||| ||||||||||  ||| |||||||||||| ||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 16429724 - 16429805
Alignment:
Q  145 cttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    ||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  16429724 cttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaataggccaatcagattttaaatgatgacacgtca 16429805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 139 - 395
Target Start/End: Original strand, 27286159 - 27286415
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 238  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  27286159 tgggagcttctatgaagaagtcgaggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaa 27286258  T
Q  239 aattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggta 338  Q
    | || |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  27286259 atttttaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggta 27286358  T
Q  339 caccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27286359 caccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 27286415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 140 - 392
Target Start/End: Complemental strand, 52386035 - 52385783
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  52386035 gggagcttctatgaagaagttgggaaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaa 52385936  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  52385935 attctaaaatggatcacgtgtttcatatgttccaccatagacaagtttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtac 52385836  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttatcac 392  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52385835 accctctacacatgatttttcttacttttccaattctctttcctctttatcac 52385783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 141 - 362
Target Start/End: Original strand, 39241555 - 39241773
Alignment:
Q  141 ggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgttt-aattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    |||||||||||||||||||  |  || |||||| |||| ||||||||||| |||   | ||||||||||| |||| || ||||||||||||||| |||||    
T  39241555 ggagcttctatgaagaagttaggaaaatgacttcttcgatgaagtcgtttgaatggggtcaatcagattttaagtgataacacgtcagatgttgagacaa 39241654  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||   ||| |||||| |||||||    
T  39241655 attctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatcttaacggttagatttacctg---tctttgttattgtggtac 39241750  T
Q  340 accctctacacatgatttttctt 362  Q
    ||| |||||||||||||||||||    
T  39241751 accatctacacatgatttttctt 39241773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 12981521 - 12981625
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 12981620  T
Q  385 tttat 389  Q
    |||||    
T  12981621 tttat 12981625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 45348344 - 45348240
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 45348245  T
Q  385 tttat 389  Q
    |||||    
T  45348244 tttat 45348240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 45325701 - 45325635
Alignment:
Q  295 gatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttct 361  Q
    |||||||||||||||||||  || ||||||||||||| |||||| ||| ||||||||||||||||||    
T  45325701 gatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatttttct 45325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 12981374 - 12981462
Alignment:
Q  138 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    |||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  12981374 atgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 12981462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 49409760 - 49409831
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttca 211  Q
    |||||||||||  ||||||||||| ||||||||| ||| | | ||||||||||||| |||||||| ||||||    
T  49409760 gggagcttctagaaagaagtcggataattgacttcttcagcgcagtcgtttaattcggccaatcaaatttca 49409831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 140 - 395
Target Start/End: Original strand, 19436668 - 19436923
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    |||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  19436668 gggagcttttatgaagaagttggggaatagactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaa 19436767  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19436768 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtac 19436867  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19436868 accctatacacatgatttttcttatttttccaattctctttcctctttatcactca 19436923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 140 - 395
Target Start/End: Complemental strand, 29834166 - 29833911
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  29834166 gggagcttctacgaagaagtcggggaattgacttttttggtaaagtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaa 29834067  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  29834066 actctaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaa 29833967  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29833966 accctctgcacatgattttacttatttttccaattctctttcctctttatcactca 29833911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 313
Target Start/End: Original strand, 29258386 - 29258556
Alignment:
Q  143 agcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaatt 242  Q
    ||||||||||||||||||||  ||||||||| |||| || ||| |||| | |  |||||||||||||||||| ||||||||||||||  | |||||||||    
T  29258386 agcttctatgaagaagtcgggcaattgacttcttcgatgcagttgtttgaatgggccaatcagatttcaagtgatgacacgtcagataat-ggacaaatt 29258484  T
Q  243 ctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatc-ttaacggttagattt 313  Q
    |||| |||||||||||| | ||| ||||||||| | |||||||||||||||  ||| |||||||||||||||    
T  29258485 ctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataatctttaacggttagattt 29258556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 45972423 - 45972527
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 45972522  T
Q  385 tttat 389  Q
    |||||    
T  45972523 tttat 45972527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 6442636 - 6442703
Alignment:
Q  295 gatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    ||||||||| |||||||||  |||||||||||||||| |||||| ||| |||||||||||||||||||    
T  6442636 gatcttaactgttagatttaattggtctctatgttattgtggtataccatctacacatgatttttctt 6442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 34094118 - 34094184
Alignment:
Q  296 atcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    ||||||||||||||||||  ||| |||||||||||| |||||| ||| |||||||||||||||||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttctt 34094184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 29243380 - 29243455
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    ||||||||| |||||||| ||||||||||  ||| |||||||  ||| |||||||||| |||||||||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttctt 29243455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 45972275 - 45972364
Alignment:
Q  137 gatgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    ||||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  45972275 gatgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 45972364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 47327942 - 47328046
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||||| ||||||||  |||||||||  ||| ||| |||||||| |||||||| | ||||||||||| ||||||| |  | |||||||||| ||||     
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 47328041  T
Q  385 tttat 389  Q
    |||||    
T  47328042 tttat 47328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 47327796 - 47327885
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 228  Q
    |||||||||||| ||||||||| |  || |||||| |||||||||||||| | | |  ||||||||||||| |||  |||||||||||||    
T  47327796 tgggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagcgatgacacgtcaga 47327885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 29243235 - 29243323
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 228  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  | ||||||||||| || | |||||||||||||    
T  29243235 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcaga 29243323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 34093973 - 34094042
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagattt 209  Q
    ||||||||||| ||||||||| || || |||||| ||||||| |||||||| | |  |||||||||||||    
T  34093973 gggagcttctacgaagaagtcagaaaaatgacttcttcggtgcagtcgtttgaatgggccaatcagattt 34094042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 140 - 395
Target Start/End: Original strand, 30624860 - 30625115
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||||||||||||||   ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  30624860 gggagcttctatgaagaagtcgagaaattgacttttttagtgaagtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataa 30624959  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||    
T  30624960 attttaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtac 30625059  T
Q  340 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30625060 accctctacacatgatttttcttatttttccaattctctttcctctttatcactca 30625115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 139 - 395
Target Start/End: Complemental strand, 41413665 - 41413409
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 238  Q
    ||||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| |||||||||||||||||| |||||    
T  41413665 tgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggaca 41413566  T
Q  239 aattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggta 338  Q
    |||| |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||  ||||| |||||||||| ||||||    
T  41413565 aattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggta 41413466  T
Q  339 caccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    |||||| |||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  41413465 caccctttacacatgatttttcttataattccaaatctctttcctctttatcactca 41413409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 138 - 395
Target Start/End: Original strand, 1828406 - 1828663
Alignment:
Q  138 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggac 237  Q
    |||||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| ||||||||||||||||||  |||    
T  1828406 atgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttatgac 1828505  T
Q  238 aaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggt 337  Q
    ||||| |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||  ||||| |||||||||| |||||    
T  1828506 aaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggt 1828605  T
Q  338 acaccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    ||||||| |||||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  1828606 acaccctttacacatgatttttcttataattccaaatctctctcctctttatcactca 1828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 139 - 395
Target Start/End: Original strand, 40313872 - 40314128
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 238  Q
    ||||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| |||||||||||||||||| |||||    
T  40313872 tgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggaca 40313971  T
Q  239 aattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggta 338  Q
    ||||  ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||  ||||| |||||||||| ||||||    
T  40313972 aattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggta 40314071  T
Q  339 caccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    |||||| |||||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  40314072 caccctttacacatgatttttcttataattccaaatctctctcctctttatcactca 40314128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 140 - 359
Target Start/End: Complemental strand, 31482290 - 31482071
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||| ||||||||| |  || |||||| |||||| ||||||||| | | ||||||||| |||| |||| ||||||| ||||| ||  ||||||    
T  31482290 gggagcttctacgaagaagtcagtaaaatgacttcttcggtaaagtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaaggacaa 31482191  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||| |||||||||||||||| | ||||||||||||||||||||  |||| |||| |||||||| |||||||||||||||||||||||| |||  ||||||    
T  31482190 attataatatggatcacttgctccatatgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggtctctatggtattatggtac 31482091  T
Q  340 accctctacacatgattttt 359  Q
    ||| ||||||||| ||||||    
T  31482090 accatctacacataattttt 31482071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 24788400 - 24788296
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||| | ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 24788301  T
Q  385 tttat 389  Q
    |||||    
T  24788300 tttat 24788296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 39884550 - 39884639
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 229  Q
    ||||| ||||| | ||||||| || || ||||||||||||||||||||||| | |   ||||||||||||||||| ||||||||||||||    
T  39884550 gggagtttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcagat 39884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 24788546 - 24788459
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    ||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  24788546 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 24788459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 39884696 - 39884763
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacat 352  Q
    ||||||||| |||||||| ||||||||||  || ||||||||||||| |||||| ||  |||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacat 39884763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 145 - 395
Target Start/End: Original strand, 12938643 - 12938893
Alignment:
Q  145 cttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattct 244  Q
    |||||||||||||||||   ||||||||||||  |||||||||||||||||| |||||||||||| |||  ||||||||||||||||||||||||||| |    
T  12938643 cttctatgaagaagtcgagaaattgacttttttagtgaagtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaatttt 12938742  T
Q  245 aatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccct 344  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12938743 aatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccct 12938842  T
Q  345 ctacacatgatttttcttatttttccaattctctttcctctttatcactca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12938843 ctacacatgatttttcttatttttccaattctctttcctctttatcactca 12938893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 165 - 395
Target Start/End: Original strand, 33694802 - 33695031
Alignment:
Q  165 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 264  Q
    |||||||||||||||||||||||||| | |   |||||||||||| |||| ||||||||| ||||  ||| | ||||| |||||||||||||||| | ||    
T  33694802 aattgactttttcggtgaagtcgtttgaatggaccaatcagattttaagtgatgacacgttagataatggaa-aaattttaatatggatcacttgctcca 33694900  T
Q  265 tatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttat 364  Q
    ||||||||| ||||||||| ||||||||| ||||||||| ||||||||| ||||| |||||| |||| ||||||||||||||||| ||||||||||||||    
T  33694901 tatgttccatcatagacaaatttatttcatgatcttaacagttagatttatttggcctctatattattgtggtacaccctctacatatgatttttcttat 33695000  T
Q  365 ttttccaattctctttcctctttatcactca 395  Q
      ||||| |||||| || |||||||||||||    
T  33695001 aattccatttctctctcttctttatcactca 33695031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 183 - 362
Target Start/End: Complemental strand, 28138217 - 28138039
Alignment:
Q  183 agtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 282  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||| ||| ||||    
T  28138217 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccatcatggaca 28138119  T
Q  283 agtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    ||||||||||| |||||||| ||||||||||  ||||||||||| |||| |||||||  | |||||||||||||||||||    
T  28138118 agtttatttcatgatcttaaaggttagatttacttggtctctatattattgtggtacgtcatctacacatgatttttctt 28138039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 12466398 - 12466481
Alignment:
Q  142 gagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtc 225  Q
    |||||||||| | ||||| ||  ||| ||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||    
T  12466398 gagcttctatcatgaagttgggaaatagactttttcggtgcagtcgtttaattcaaccaatcaaatttcaagtcataacacgtc 12466481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 14532131 - 14532051
Alignment:
Q  239 aattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttgg 319  Q
    |||||||||||| |  ||||| |  ||||||| |||||| |||| ||||| |||| |||||||| ||||||||||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagatttgtttgg 14532051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 20891441 - 20891400
Alignment:
Q  93 agaaaatggagatgttgcatctaaactctttcgaataattga 134  Q
    |||||||| |||||| ||||||||| ||||||||||||||||    
T  20891441 agaaaatgaagatgtagcatctaaattctttcgaataattga 20891400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 140 - 359
Target Start/End: Complemental strand, 13802901 - 13802682
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 239  Q
    ||||||||||| ||||||||| |  || ||||||||||||| ||||||||| | | | |||||||||||| |||| ||||||||||||| ||  ||||||    
T  13802901 gggagcttctacgaagaagtcagtaaaatgactttttcggtaaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaaggacaa 13802802  T
Q  240 attctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtac 339  Q
    ||| |||||||||||||||| | ||||||||||||||||||||  |||| || | |||||||| |||||||||||||||||||||||  |||  ||||||    
T  13802801 attataatatggatcacttgctccatatgttccaccatagacagatttacttgatgatcttaatggttagatttgtttggtctctatcgtattatggtac 13802702  T
Q  340 accctctacacatgattttt 359  Q
    ||| ||||||||| ||||||    
T  13802701 accatctacacataattttt 13802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 23613574 - 23613699
Alignment:
Q  235 gacaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttc-aagatcttaacggttagatttgtttggtctctatgttatcg 333  Q
    |||||||||||||||||| |||||| |  |||||||||||||| || || ||| |||  ||||||||||||||||||||||||||||||| ||| ||| |    
T  23613574 gacaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattg 23613673  T
Q  334 tggtacaccctctacacatgattttt 359  Q
    ||||||| ||||||||||||||||||    
T  23613674 tggtacagcctctacacatgattttt 23613699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 3879689 - 3879600
Alignment:
Q  140 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 229  Q
    ||||||||||| ||||||||| || ||  |||||||||||||||||||||| | | ||||||| ||||||||||| ||||||||||||||    
T  3879689 gggagcttctacgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgagccaattagatttcaagtgatgacacgtcagat 3879600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 23614215 - 23614338
Alignment:
Q  238 aaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttc--aagatcttaacggttagatttgtttggtctctatgttatcgtg 335  Q
    |||||||||||| || |||||| |  ||||||| ||| || ||||| ||| |||   ||||||||||||||||||||||||||||||| ||  ||| |||    
T  23614215 aaattctaatatagaccacttgatcaatatgtttcactatggacaacttttttttttaagatcttaacggttagatttgtttggtctccataatattgtg 23614314  T
Q  336 gtacaccctctacacatgattttt 359  Q
    | ||||||||||||||||||||||    
T  23614315 gcacaccctctacacatgattttt 23614338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 531684 - 531788
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    |||||||||  || |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 531783  T
Q  385 tttat 389  Q
    |||||    
T  531784 tttat 531788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 30945527 - 30945452
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttctt 362  Q
    ||||||||| |||||||| ||||||||||  ||| |||||||  ||| |||||||||| |||||||||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttctt 30945452  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 531538 - 531625
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    ||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  531538 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 531625  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 3879543 - 3879472
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatt 356  Q
    ||||||||| |||||||| ||||||||||  |||||||||||||||| |||||| |   |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 3879472  T

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Target: scaffold0166 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 30783 - 30679
Alignment:
Q  285 tttatttcaagatcttaacggttagatttgtttggtctctatgttatcgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 384  Q
    ||||||| | ||| |||| ||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 30684  T
Q  385 tttat 389  Q
    |||||    
T  30683 tttat 30679  T

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Target: scaffold0166; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 30929 - 30842
Alignment:
Q  139 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 226  Q
    ||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  30929 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 30842  T

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Target: scaffold0338 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 18970 - 19011
Alignment:
Q  95 aaaatggagatgttgcatctaaactctttcgaataattgatt 136  Q
    |||||| ||||||  |||||||||||||||||||||||||||    
T  18970 aaaatgaagatgtaacatctaaactctttcgaataattgatt 19011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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