View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_14 (Length: 514)
Name: NF5931_high_14
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_14 |
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| [»] scaffold0206 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 104 - 495
Target Start/End: Original strand, 3476671 - 3477062
Alignment:
| Q |
104 |
cctatcttggttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
203 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3476671 |
cctatcttggttggtggctatccttgaaacaatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
3476770 |
T |
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| Q |
204 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattagtttctatctatacta |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3476771 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattagtttctatctatacta |
3476870 |
T |
|
| Q |
304 |
ttcatattcatagaatgttattgtatttatttaagtatcatgacttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaattgaagttta |
403 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3476871 |
ttcatattcatagaatgttattgtatttatttgagtatcatggcttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaattgaagttta |
3476970 |
T |
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| Q |
404 |
ttgtagttgtttgtttgatgggttttttgatttgatgataataactggcaacacaaaactctacatgttactagttttgctgtgtaacgtaa |
495 |
Q |
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| T |
3476971 |
ttgtagttgtttgtttgatggggtttttgatttgatgataataactggcaacacaaaactctacatgttactagttttgttgtgtaacgtaa |
3477062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 3476570 - 3476613
Alignment:
| Q |
3 |
aggaggagcagagagcttgtgttgatgggttgcaaggtttggat |
46 |
Q |
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| T |
3476570 |
aggaggagccgggagcttgtgttgatgggttgcaaggtttggat |
3476613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 104 - 493
Target Start/End: Original strand, 16016 - 16413
Alignment:
| Q |
104 |
cctatcttggttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
203 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
16016 |
cctatcttcgttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgttttttgtactctattttaataagttag |
16115 |
T |
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| Q |
204 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttg-----tattagtttctatcta |
298 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16116 |
gttaatttggtgtatgaattcgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattatattagtttctatcta |
16215 |
T |
|
| Q |
299 |
tactattcatattcatagaa---tgttattgtatttatttaagtatcatgacttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaatt |
395 |
Q |
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| T |
16216 |
tactattcatattcatagaatgttgttattgtatttatttgagtatcatggcttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaatt |
16315 |
T |
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| Q |
396 |
gaagtttattgtagttgtttgtttgatgggttttttgatttgatgataataactggcaacacaaaactctacatgttactagttttgctgtgtaacgt |
493 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16316 |
gaggtttattgtagttgtttgtttgatggggtttttgatttgatgataataacttgcaacacaaaactctacatgttactagttttgttgtgtaacgt |
16413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 15918 - 15958
Alignment:
| Q |
6 |
aggagcagagagcttgtgttgatgggttgcaaggtttggat |
46 |
Q |
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| T |
15918 |
aggagccgggagcttgtgttgatgggttgcaaggtttggat |
15958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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