View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_16 (Length: 507)
Name: NF5931_high_16
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 15138647 - 15138186
Alignment:
| Q |
13 |
agcagagagattgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatcaggaatgaatcagaaccgactt |
112 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||| | |
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| T |
15138647 |
agcagagagattgaggcacgtgaacacaactcaaacccggaatgatccggatttgacttccaacttcaaacccagatcaggaatgaagcaaaatcgacct |
15138548 |
T |
|
| Q |
113 |
ccggtattgaatcacgaacaacccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaagc |
212 |
Q |
| |
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|||||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15138547 |
ccggtattgaatcacgaacaactcataaaagagaaaacaaccaccacgagaaaggcagcgccagacttcctaggttcaaaaccatcgttcggacacaagc |
15138448 |
T |
|
| Q |
213 |
acgagctgcaacaccgtcgatatgaacggaggcagtggctaaagacccaacgaccgaagcaacacaaccctcacatctagcaaggagtcaaccatcaaat |
312 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
15138447 |
acgagctgcaacatcgtcgatatgaacggcggcagtggctaaagacccaacgaccgaagcaacacaaccctcacctttggcaaggagtcaaccatcaaat |
15138348 |
T |
|
| Q |
313 |
ttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaagggtatgacggtggcgcggagaaacactctcctcgcaccacc |
412 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| | | ||||| ||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
15138347 |
ttgcgaacaacgacggaatcgacgagcatgacagacaaaaggagcgccataggaagaagtgtatgatggtggcgcggagaaacactctcctcgcaccacc |
15138248 |
T |
|
| Q |
413 |
atcttctagatctacatcgtggtggctgagattggaaaaggaaggagcagcagctaaggttc |
474 |
Q |
| |
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| T |
15138247 |
atcttctagatctacatcgtggtggctgagattggaaaaggaaggagtggcagctaaggttc |
15138186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 485
Target Start/End: Complemental strand, 20736315 - 20735842
Alignment:
| Q |
13 |
agcagagagattgaggcacatgaacacaactcaaacccggaatgatccgaa-tttgacttccaacttcaaacccagatcaggaatgaatcagaaccgact |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||| |
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| T |
20736315 |
agcagagagattgaggcacacgaacacaactcaaacccagaatgatccgaaatttgacttccaacttcaaacctagatcaggaatgaagcagaatcgacc |
20736216 |
T |
|
| Q |
112 |
tccggtattgaatcacgaacaacccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaag |
211 |
Q |
| |
|
||| ||| ||| |||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
20736215 |
tcccgtaatga-tcacaaacaacccatagaagagccaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaacatcgttcagacacaag |
20736117 |
T |
|
| Q |
212 |
cacgagctgcaacaccgtcgatatgaacggaggcagtggctaaagacccaacgaccgaagcaacacaaccctcacatctagcaaggagtcaaccatcaaa |
311 |
Q |
| |
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|||||| |||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||||| |
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| T |
20736116 |
cacgagatgcaacactttcattatgaacggcagcagtggctaaagacccaacgaccgaaggaacacaaccctcacctctggcaaggagccaaccatcttt |
20736017 |
T |
|
| Q |
312 |
tttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaagggtatgacggtggcgcggagaaacactc-tcctcgcacca |
410 |
Q |
| |
|
| || |||| ||||| ||||||||||||||||||||| |||||||| | | | ||| |||||| ||||||||||||| ||||||| || | ||||||||| |
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|
| T |
20736016 |
tctgtgaacgacgacagaatcgacgagcatgacagacgaaaggagcgccagatgaagaagggtgtgacggtggcgcgaagaaacattctttctcgcacca |
20735917 |
T |
|
| Q |
411 |
ccatcttctagatctacatcgtggtggctgagattggaaaaggaaggagcagcagctaaggttccggggcggcgg |
485 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||| |||| |
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|
| T |
20735916 |
acatctcctagatctacatcatggtggttgagattggaaaaggaaagagcgacatctaaggttcaggggcagcgg |
20735842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 207 - 480
Target Start/End: Complemental strand, 20743660 - 20743386
Alignment:
| Q |
207 |
acaagcacgagctgcaacaccgtcgatatgaacggaggcagtggctaaagacccaacgaccgaagcaacacaaccctcacatctagcaaggagtcaacca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || || |||||||| |||||| |
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|
| T |
20743660 |
acaagcacgagctgcaacaccgtcgatatgaacggcggcagtggctaaagatccaacgaccgaagcaacacaacccttacctcacgcaaggagccaacca |
20743561 |
T |
|
| Q |
307 |
tcaaatttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaagggtatgacggtggcgcggagaaacactc-tcctcg |
405 |
Q |
| |
|
|| | |||||| ||||| |||||||||||||||| |||| |||||||| | | ||||| |||||| ||||||||||||| ||||||| || ||||| |
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|
| T |
20743560 |
tcttttcggcgaacgacgacggaatcgacgagcatgatagacgaaaggagcgccagaggaagaagggtgtgacggtggcgcgaagaaacattcttcctca |
20743461 |
T |
|
| Q |
406 |
caccaccatcttctagatctacatcgtggtggctgagattggaaaaggaaggagcagcagctaaggttccggggc |
480 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
20743460 |
caccaccatctcctagatctacatcatggtgtctgagattggaaaaggaaagagcgacagctaaggttcaggggc |
20743386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 20746005 - 20745807
Alignment:
| Q |
13 |
agcagagagattgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatcaggaatgaatcagaaccgactt |
112 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| | |
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|
| T |
20746005 |
agcagagaaattgaggcacacgaacacaattcaaacccggaatgatccgaatttgacttccaacttcaaacccagctcaggcatgaagcagaaccgacct |
20745906 |
T |
|
| Q |
113 |
ccggtattgaatcacgaacaacccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaag |
211 |
Q |
| |
|
|| ||| |||||||| ||||||||||| || ||| ||||||||||||||||||||| || || ||||||| |||||||||| |||||||| |||||||| |
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|
| T |
20745905 |
cccgtaatgaatcacaaacaacccatagaagagccaacaaccaccgtgagaaaggcggcaccagacttcccaggttcaaaaacatcgttcagacacaag |
20745807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 17665251 - 17665307
Alignment:
| Q |
386 |
gcggagaaacactctcctcgcaccaccatcttctagatctacatcgtggtggctgag |
442 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | ||||||||||||||||| |||| |
|
|
| T |
17665251 |
gcggagaaaagctctcctcgcatcaccatctcccggatctacatcgtggtggttgag |
17665307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 272 - 460
Target Start/End: Complemental strand, 3733392 - 3733204
Alignment:
| Q |
272 |
caacacaaccctcacatctagcaaggagtcaaccatcaaatttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaag |
371 |
Q |
| |
|
|||||||||||| || || ||||||| ||||||||||| ||| |||||||| |||||||||| || || |||| || ||||| | | |||| ||| |
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|
| T |
3733392 |
caacacaaccctaacctccggcaaggaaccaaccatcaaacctgcaaacaacgaaggaatcgacgaacacgaaagacgaagggagcgccaaaggaggaag |
3733293 |
T |
|
| Q |
372 |
ggtatgacggtggcgcggagaaacactctcctcgcaccaccatcttctagatctacatcgtggtggctgagattggaaaaggaaggagc |
460 |
Q |
| |
|
||| ||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3733292 |
ggtgtgacggtggtgcggagaaaagctctcctcgcaccaccatctcctaaatctacatcgtggtggctgagattggaaaagggaggagc |
3733204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 8770318 - 8770426
Alignment:
| Q |
112 |
tccggtattgaatcacgaacaa-cccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaa |
210 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||| ||||||||| | ||||||| ||| |||||||||||| |
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| T |
8770318 |
tccggtagtgaatcacgaacaaacccataaaagagccaacaaccaccgtgagaaaggcggcgtcggacttcccatgttcaaacccaatgttcggacacaa |
8770417 |
T |
|
| Q |
211 |
gcacgagct |
219 |
Q |
| |
|
||||||||| |
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|
| T |
8770418 |
gcacgagct |
8770426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 8770188 - 8770263
Alignment:
| Q |
15 |
cagagagattgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatc |
90 |
Q |
| |
|
|||||| ||||||||| | || ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8770188 |
cagagatattgaggcataggagcacaactcaaacctagaatgatccggatttgacttccaacttcaaacccagatc |
8770263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 3734871 - 3734800
Alignment:
| Q |
24 |
tgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatcaggaa |
95 |
Q |
| |
|
||||||||| || |||| |||||||| |||||||||| ||||||||| |||||||||||||||||| |||| |
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|
| T |
3734871 |
tgaggcacaataaaacaattcaaacccagaatgatccggatttgacttacaacttcaaacccagatctggaa |
3734800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 23441076 - 23441020
Alignment:
| Q |
26 |
aggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaa |
82 |
Q |
| |
|
||||||| |||||||||||||| | |||||||||||||| |||||| ||||||||| |
|
|
| T |
23441076 |
aggcacaataacacaactcaaactcagaatgatccgaattcgacttcaaacttcaaa |
23441020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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