View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_19 (Length: 472)
Name: NF5931_high_19
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 55695832 - 55695428
Alignment:
| Q |
1 |
caaaattcaagccaactttttaaatcaaaattgcattatttttgtcatcagttgcagttttttaaggctctttaacttgccgtttgataatgtggtttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55695832 |
caaaattcaagccaactttttaaatcaaaattgcattatttttgtcattagttgcagttttttaaggctctttaacttgccgtttgataatgtggtttta |
55695733 |
T |
|
| Q |
101 |
tttcataaaacccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgggtaaattatgatagagtttcg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
55695732 |
tttcataaaatccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgagtaaattatgatagagttttg |
55695633 |
T |
|
| Q |
201 |
gcnnnnnnnnnnnnnnnnntataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataaatcc |
300 |
Q |
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| T |
55695632 |
gcaaaataaaaaagtaaaatataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataaatcc |
55695533 |
T |
|
| Q |
301 |
gtaaagccatacccatagacttaccttcacaataagatcaatgacaaaagaaaccaaacaaataaagcggaaaagcttctcatcaactttgacatgtgaa |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55695532 |
gtaaagccatacccatag---taccttcacaataagatcaatgacaaaagaagccaaacaaataaagcagaaaagcttctcatcaactttgacatgtgaa |
55695436 |
T |
|
| Q |
401 |
aaaagtag |
408 |
Q |
| |
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|||||||| |
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| T |
55695435 |
aaaagtag |
55695428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 462
Target Start/End: Complemental strand, 55695419 - 55695385
Alignment:
| Q |
428 |
tagactcctttctgatcactttttatgcttctgtg |
462 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
55695419 |
tagactcctttctgatcactttttatgcttctgtg |
55695385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 35803856 - 35804064
Alignment:
| Q |
1 |
caaaattcaagccaactttttaaatcaaaattgcattatttttgtc------------atcagttgcagttttttaaggctctttaacttgccgtttgat |
88 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||| |
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| T |
35803856 |
caaaattcaagccaactttttaattcaaaattgcattatttttgttgtcattttttttatcagttgcaatttt-taaggctctttaacttgccttttgat |
35803954 |
T |
|
| Q |
89 |
aatgtggttttatttcataaaacccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgggtaaattat |
188 |
Q |
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|||||||||||||||| ||||| |||||| ||||| |||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||| |
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| T |
35803955 |
aatgtggttttatttcttaaaatccctttacaaaagtttgttttctaattttcttgtggtgcactcct-ccctctttctgaaatcctttgggtaaattat |
35804053 |
T |
|
| Q |
189 |
gatagagtttc |
199 |
Q |
| |
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|||||| |||| |
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|
| T |
35804054 |
gatagactttc |
35804064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 35804198 - 35804319
Alignment:
| Q |
285 |
atataataataaatccgtaaagccatacccatagacttaccttcacaataagatcaatgacaaaa---gaaaccaaacaaataaagcggaaaagcttctc |
381 |
Q |
| |
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|||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
35804198 |
atataataataattctgtaaagccatacccaaagacttaccttcaaaataagatcaatgaaaaaaaacaaaaccaaacaaataaaatagaaaagcttctc |
35804297 |
T |
|
| Q |
382 |
atcaactttgacatgtgaaaaa |
403 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
35804298 |
atcaactttgacttgtgaaaaa |
35804319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 35804087 - 35804127
Alignment:
| Q |
220 |
tataatttattcaaaccaggagaaatacataatgaccaaac |
260 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35804087 |
tataatttattcaaaccagaagaaatacataatgaccaaac |
35804127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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