View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_high_2 (Length: 667)
Name: NF5931_high_2
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 39 - 627
Target Start/End: Complemental strand, 44040690 - 44040117
Alignment:
| Q |
39 |
acaaatagatttgggatattttcataattggttatacttacaatttgttgggtgagataaatttagagttttctcatctagattggataattaataagga |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44040690 |
acaaatagatttgggatattttcataattggttatacttacaatttgttgggtgagataaatttagatttttctcatctagattggataattaataagga |
44040591 |
T |
|
| Q |
139 |
tttaggtataaaatttgtctatttggtacaataatttctcttaatttatatgtttaagaatataaaacaatggactgaaattatttctatannnnnnnag |
238 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
44040590 |
tttaggtttaa--tttgtctatttggtacaataatttctcttaatttatatgtttaagaatataaaacaatggagtgaaattatttctatatttttttag |
44040493 |
T |
|
| Q |
239 |
atgtcattttttcactatatgagaattgatcattatttgaaaagactcaaattcattaattaatttcataagttcgtttcaaatgtttttccaagtgttt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44040492 |
atgtcattttttcactatatgagaattgatcattatttgaaaagactcaaattcattaattcatttcataagttcgtttcaaatgtttttccaagtgttt |
44040393 |
T |
|
| Q |
339 |
gttagcatattcattcacccttcacccttaaacgaaatgaccctcaaatatttagagaaggtttcttcccttattctcnnnnnnnnnnnnnnnnnnngaa |
438 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44040392 |
gttagcatattcattcacccttga--------------gaccctcaaatatttagagaaggtttcttcccttattctttttttttaattttctttttgaa |
44040307 |
T |
|
| Q |
439 |
ggattctcttactctatttagatcttaaccataaataaagggattcccttaatctttttgaagttcctcttatcctggagtaacatcttaaccataaatt |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44040306 |
ggattctcttactctatttagatcttaaccataaataaagggtttcccttaatctttttgaagttcctcttatactggagtaacatcttaaccataaatt |
44040207 |
T |
|
| Q |
539 |
ttcttgtcttattgagaagaggaaacgtgaaattataaagttgtagatcttatttcttaatcaagcaaac-aaataaataaataaattat |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44040206 |
ttcttgtcttattgagaagaggaaacgtgaaattataaagtttgagatcttatttcttaatcaagcaaacaaaataaataaataaattat |
44040117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University