View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_25 (Length: 435)
Name: NF5931_high_25
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 44347156 - 44346739
Alignment:
| Q |
1 |
aattatcatgtaataaaaggttatttgtttcgaaactatttaataaaaggatcccaacaaaggataatctaagtcgtcgtggtgtggggcttctgattcg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44347156 |
aattatcatgtaataaaaggttatttgttttgaaactatttaataaaaggatcccaacaaaggataatctaagtcgtcgtggtgtggggcttctgattcg |
44347057 |
T |
|
| Q |
101 |
ttacattgttcgggaggacatggtaaggaggaggaaacaattaatcatctatttgttggttgtgacttctttggtagcgttgatggcgcgcttttgttcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
44347056 |
ttacattgttcgggaggacatggtaaggaggaggaaacaattaatcatctatttgttggttgtgacttctttggtagtgttgatggtgcgcttttgttcg |
44346957 |
T |
|
| Q |
201 |
ggaaggaaatcagctcttgtcttcgagtaatctagatgtcctgtatcttggttatttgaaaagaacgtagtgcaagaatttttaatattagagatctttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44346956 |
ggaaggaaatcagctcttgtcttcgagtaatctagatgtcctgtatcttggttatttgaaaagaacgtagtgcaagaatttttaatattagagatctttg |
44346857 |
T |
|
| Q |
301 |
gatgaagcagttacttataaaagctttgttcttagtggtg--nnnnnnnnnnnnnngaaacagcttatattattaatcaccaaattatacaagcagtaca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44346856 |
gatgaagcagttacttataaaagctttgttcttagtagtggtttttttttttttttgaaacagcttatattattaatcaccaaattatacaagcagtaca |
44346757 |
T |
|
| Q |
399 |
gttacaaggcgataacca |
416 |
Q |
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| T |
44346756 |
gttacaaggcgataacca |
44346739 |
T |
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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 55353892 - 55353837
Alignment:
| Q |
356 |
aaacagcttatattattaatcaccaaattatacaagcagtacagttacaaggcgat |
411 |
Q |
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| T |
55353892 |
aaacagcttatattattaaacaccaaattatacaagcagtacaattacaaggcgat |
55353837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 36281727 - 36281683
Alignment:
| Q |
132 |
aggaaacaattaatcatctatttgttggttgtgacttctttggta |
176 |
Q |
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||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
36281727 |
aggaaacaattaatcatctatttcttggatatgacttctttggta |
36281683 |
T |
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