View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_29 (Length: 415)
Name: NF5931_high_29
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 22042849 - 22042567
Alignment:
| Q |
19 |
caacttttattccatctcacatatgcaacttgggttttctctccatatat--ctttctatataaaccatatattgacataattgaatgttcacaataaaa |
116 |
Q |
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| T |
22042849 |
caacttttattccatctcacatatgcaacttggcttttctctccatatatatctttatatataacccatctcttgacattattgcatcttcacaataaaa |
22042750 |
T |
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| Q |
117 |
aatataactacatcatctttcacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaagttttgggaggttttgaaactgtacat |
216 |
Q |
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| T |
22042749 |
aatataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaaattctaggaggttttgaaactgtacat |
22042650 |
T |
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| Q |
217 |
cttccatatcaggtattctatattttcagctttcctaactgctgattttaat-ttgttatactactctgcactgttgttaaactt |
300 |
Q |
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| T |
22042649 |
cttccatatcaggtattctatattttcagctttcctaactgct--ctgcactgttgttatactactctgcactgttgttatactt |
22042567 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 41592165 - 41592210
Alignment:
| Q |
370 |
tgtgtgtccgagtgatggatattcttaaggctccgctacaacgttc |
415 |
Q |
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| T |
41592165 |
tgtgtgtccgagtgatggatattcttaaggctcagctacaacgttc |
41592210 |
T |
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