View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_34 (Length: 394)
Name: NF5931_high_34
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_34 |
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| [»] scaffold0262 (2 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 13457948 - 13458324
Alignment:
| Q |
18 |
attccctgaaatgcatcaagattaatggtcatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtccaagaaagatgcattccc |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13457948 |
attccctgaaatgcatcaagattaatggtgatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtctaagaaagatgcattccc |
13458047 |
T |
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| Q |
118 |
ttgtttctacaaggcctattctcaccttcggatgaaaaactggtaggtcaggagctca---gtatggtgtagacttgattgtctatcgcaatcatccggc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
13458048 |
ttgtttctacaaggcctattctcaccttcggatgaaaaactggtaggtcaggagctcatcagtatggtgtagacttgattgtccatcgcaatcatccggc |
13458147 |
T |
|
| Q |
215 |
tcgggtgcattctgagtattgtgtgtttgttctatcacatgagatcgatgatcacctaaatgaaagattgagagtatggtctgatgttcattgcacaact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13458148 |
tcgggtgcattctgagtattgtgtgtttgttctatcacatgagatcgatgattacctaaatgaaagattgagagtatggtctgatgttcattgcacaact |
13458247 |
T |
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| Q |
315 |
tgaattcttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctgct |
391 |
Q |
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| T |
13458248 |
tgacttcttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctgct |
13458324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 35 - 389
Target Start/End: Complemental strand, 36663560 - 36663201
Alignment:
| Q |
35 |
aagattaatggtcatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtccaagaaagatgcattcccttgtttctacaaggcct |
134 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||| |||||||||||| | |
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| T |
36663560 |
aagattaatgttggtgctgataccggtcccttaaatgatgaagagttgtggcattacttcaggtccaagaaagaaacattcccttatttctacaaggctt |
36663461 |
T |
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| Q |
135 |
attctcaccttcggatgaaaaactggt-----aggtcaggagctcagtatggtgtagacttgattgtctatcgcaatcatccggctcgggtgcattctga |
229 |
Q |
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||||||| ||| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
36663460 |
attctcatcttagaatgaaaaattgggttgtgaggtcaggggctcagtatggtgtagacttgattgtctatcgccatcatcctgctcgggtgcattctga |
36663361 |
T |
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| Q |
230 |
gtattgtgtgtttgttctatcacatgagatcgatgatcacctaaatgaaagattgagagtatggtctgatgttcattgcacaacttgaattcttggaagt |
329 |
Q |
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|||| |||| |||||||||| ||||| | |||| | | ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| || |
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| T |
36663360 |
gtatggtgtacttgttctatctcatgacaaggatggtgatctaaatggaagattgagagtatggtctgatgttcattgcacaactcgacttcttggaggt |
36663261 |
T |
|
| Q |
330 |
gttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctg |
389 |
Q |
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||||| |||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |
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| T |
36663260 |
gttgcaaaaaccttattagttttgtacgttaacaaaaatggtaacaatgatgagtctctg |
36663201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 24 - 389
Target Start/End: Complemental strand, 6870 - 6500
Alignment:
| Q |
24 |
tgaaatgcatcaagattaatggtcatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtccaagaaagatgcattcccttgttt |
123 |
Q |
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|||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||| |
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| T |
6870 |
tgaaatgcctcaagattaatgacggtgctgatactggtcccttaaatgatgaagagttgtggtgttgcttcaagtccaagaaagaaacattcccttattt |
6771 |
T |
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| Q |
124 |
ctacaaggcctattctcaccttcggatgaaaaactggt-----aggtcaggagctcagtatggtgtagacttgattgtctatcgcaatcatccggctcgg |
218 |
Q |
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||||||||| |||||||||||||| |||||||||||| |||||| | ||||||||||||||||||| ||||| |||||| ||||||||||| || |
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| T |
6770 |
ctacaaggcttattctcaccttcgaatgaaaaactgggtagtgaggtcaaggtctcagtatggtgtagactttattgtttatcgccatcatccggcttgg |
6671 |
T |
|
| Q |
219 |
gtgcattctgagtattgtgtgtttgttctatcacatgagatcgatgatcacctaaatgaaagattgagagtatggtctgatgttcattgcacaacttgaa |
318 |
Q |
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||||||||||||||| |||| |||||||||||||||| | |||| | | |||||| ||||||||||||||| |||||||||| |||||||||| | |
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| T |
6670 |
gtgcattctgagtatggtgtacttgttctatcacatgacaatgatggtgaattaaatggaagattgagagtatgatctgatgttctttgcacaactcaac |
6571 |
T |
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| Q |
319 |
ttcttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctg |
389 |
Q |
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|||||||||||||||| ||||||||| |||||||||| |||||||||||| | || ||||| |||||||| |
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| T |
6570 |
ttcttggaagtgttgcaaaaaccttactagttttgtacgttaacaaaaatggtgactgtgataagtctctg |
6500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 10016 - 10083
Alignment:
| Q |
322 |
ttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctg |
389 |
Q |
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||||||||||||| ||||||||| |||||||||| |||||||||||| | |||||||| |||||||| |
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| T |
10016 |
ttggaagtgttgcaaaaaccttactagttttgtacgttaacaaaaatggtgacagtgataagtctctg |
10083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 250596 - 250495
Alignment:
| Q |
18 |
attccctgaaatgcatcaagattaatggtcatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtccaagaaagatgcattccc |
117 |
Q |
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||||| |||||||| |||||||||||||| ||| |||||| |||||||||||||| |||||||| ||| || ||||||||||||||||||||||| |||| |
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| T |
250596 |
attccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactccc |
250497 |
T |
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| Q |
118 |
tt |
119 |
Q |
| |
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|| |
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| T |
250496 |
tt |
250495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 49350289 - 49350188
Alignment:
| Q |
18 |
attccctgaaatgcatcaagattaatggtcatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtccaagaaagatgcattccc |
117 |
Q |
| |
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||||| |||||||| |||||||||||||| ||| |||||| |||||||||||||| |||||||| ||| || ||||||||||||||||||||||| |||| |
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| T |
49350289 |
attccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactccc |
49350190 |
T |
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| Q |
118 |
tt |
119 |
Q |
| |
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|| |
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| T |
49350189 |
tt |
49350188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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