View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_high_35 (Length: 391)

Name: NF5931_high_35
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_high_35
NF5931_high_35
[»] chr4 (22 HSPs)
chr4 (132-377)||(34662353-34662597)
chr4 (137-242)||(26832591-26832696)
chr4 (137-242)||(26433880-26433985)
chr4 (137-242)||(26435660-26435765)
chr4 (1-98)||(34662222-34662319)
chr4 (137-241)||(23868589-23868693)
chr4 (137-242)||(23885683-23885788)
chr4 (1-98)||(26435804-26435901)
chr4 (1-98)||(26832735-26832832)
chr4 (149-241)||(23453701-23453793)
chr4 (149-242)||(24307079-24307172)
chr4 (1-98)||(26434024-26434121)
chr4 (149-241)||(23401931-23402023)
chr4 (138-241)||(23416024-23416127)
chr4 (1-98)||(24307223-24307320)
chr4 (1-97)||(23408721-23408817)
chr4 (149-241)||(23408869-23408961)
chr4 (1-98)||(23415890-23415987)
chr4 (1-98)||(23868732-23868829)
chr4 (1-98)||(23885827-23885924)
chr4 (1-97)||(23402075-23402171)
chr4 (1-97)||(23453553-23453649)
[»] chr1 (2 HSPs)
chr1 (1-98)||(41670400-41670497)
chr1 (1-97)||(40795770-40795866)
[»] chr7 (1 HSPs)
chr7 (3-98)||(40180453-40180548)
[»] chr2 (1 HSPs)
chr2 (193-241)||(14715372-14715420)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 132 - 377
Target Start/End: Original strand, 34662353 - 34662597
Alignment:
Q  132 ccagaggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34662353 ccagaggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcag 34662452  T
Q  232 gtttcttctctccctttggtgccgttgaatggattgggaatttggaaactggtgattgtttgtttgtttagattgatgcggtgtgtttatatatgtgaac 331  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34662453 gtttcttctctccctttggtgccattgaatggattgggaatttggaaactggtgattgtttgtttgtttagattgatgcgg-gtgtttatatatgtgaac 34662551  T
Q  332 gctcttgcgtttctattggctagtcaggtttgttgcggattgatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34662552 gctcttgcgtttctattggctagtcaggtttgttgcggattgatga 34662597  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 26832696 - 26832591
Alignment:
Q  137 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 236  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  26832696 ggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttc 26832597  T
Q  237 ttctct 242  Q
    ||||||    
T  26832596 ttctct 26832591  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 26433985 - 26433880
Alignment:
Q  137 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 236  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  26433985 ggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttc 26433886  T
Q  237 ttctct 242  Q
    ||||||    
T  26433885 ttctct 26433880  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 26435765 - 26435660
Alignment:
Q  137 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 236  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  26435765 ggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttc 26435666  T
Q  237 ttctct 242  Q
    ||||||    
T  26435665 ttctct 26435660  T

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Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34662222 - 34662319
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  34662222 tgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttca 34662319  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 23868693 - 23868589
Alignment:
Q  137 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 236  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  23868693 ggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggtttc 23868594  T
Q  237 ttctc 241  Q
    |||||    
T  23868593 ttctc 23868589  T

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Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 23885788 - 23885683
Alignment:
Q  137 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 236  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||||    
T  23885788 ggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctggtttc 23885689  T
Q  237 ttctct 242  Q
    ||||||    
T  23885688 ttctct 23885683  T

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Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26435901 - 26435804
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||    
T  26435901 tgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttca 26435804  T

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Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26832832 - 26832735
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||    
T  26832832 tgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttca 26832735  T

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Target: chr4; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 23453701 - 23453793
Alignment:
Q  149 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 241  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  23453701 ttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc 23453793  T

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Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 24307172 - 24307079
Alignment:
Q  149 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctct 242  Q
    ||||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  24307172 ttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtttcttctct 24307079  T

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Target: chr4; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26434121 - 26434024
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||| ||||||    
T  26434121 tgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttca 26434024  T

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Target: chr4; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 23402023 - 23401931
Alignment:
Q  149 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 241  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||    
T  23402023 ttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttctc 23401931  T

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Target: chr4; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 23416024 - 23416127
Alignment:
Q  138 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 237  Q
    |||||||| | ||||||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||    
T  23416024 gctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctggtttct 23416123  T
Q  238 tctc 241  Q
    ||||    
T  23416124 tctc 23416127  T

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Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24307320 - 24307223
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||||  || |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||| ||||||    
T  24307320 tgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttca 24307223  T

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Target: chr4; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23408721 - 23408817
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttc 97  Q
    |||||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||| |||||    
T  23408721 tgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttc 23408817  T

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Target: chr4; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 23408869 - 23408961
Alignment:
Q  149 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 241  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||    
T  23408869 ttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttctc 23408961  T

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Target: chr4; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 23415890 - 23415987
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||| || ||||| || |||||||||||  ||||||| ||||||    
T  23415890 tgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttca 23415987  T

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Target: chr4; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 23868829 - 23868732
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||||  || |||||| ||||||||||||||||||||||||||||||| || ||||| || |||||||||||  ||||||| ||||||    
T  23868829 tgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttca 23868732  T

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Target: chr4; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 23885924 - 23885827
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||| || ||||| || |||||||||||  ||||||| ||||||    
T  23885924 tgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttca 23885827  T

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Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23402171 - 23402075
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttc 97  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||| || ||||| || |||||||||||  ||||||| |||||    
T  23402171 tgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23402075  T

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Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23453553 - 23453649
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttc 97  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||| || ||||| || |||||||||||  ||||||| |||||    
T  23453553 tgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttc 23453649  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 41670497 - 41670400
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    ||||||| |||||||  || |||||  | |||||||||||||||||||| || ||||| || || || ||||||||||||||  ||||||||||||||    
T  41670497 tgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttca 41670400  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40795866 - 40795770
Alignment:
Q  1 tgatgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttc 97  Q
    |||||||||||||||  || |||||  | ||||| ||||| |||||||| || ||||| || || || ||||||||||||||  |||||||||||||    
T  40795866 tgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc 40795770  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 40180453 - 40180548
Alignment:
Q  3 atgaaactgttcagaatacccatgtctttgcttgagataccaatgtctgggtgaacttgtttcagtaccttgaagatgtatttcttgtaggtttca 98  Q
    |||||||||||||  || |||||  | |||||||| | ||| || || || ||||| |||||||| ||||||||||||||| ||||||||||||||    
T  40180453 atgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttca 40180548  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
Q  193 gagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 241  Q
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T  14715420 gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc 14715372  T

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