View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_high_41 (Length: 358)

Name: NF5931_high_41
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_high_41
NF5931_high_41
[»] chr4 (6 HSPs)
chr4 (1-300)||(36195722-36196022)
chr4 (249-302)||(49492784-49492837)
chr4 (249-302)||(49492898-49492951)
chr4 (23-69)||(51613012-51613058)
chr4 (249-294)||(25407252-25407297)
chr4 (234-294)||(23937005-23937065)
[»] chr3 (5 HSPs)
chr3 (231-294)||(36637200-36637263)
chr3 (252-294)||(44941065-44941107)
chr3 (22-67)||(26513075-26513120)
chr3 (238-294)||(42522001-42522058)
chr3 (24-52)||(17586938-17586966)
[»] chr7 (2 HSPs)
chr7 (236-292)||(21621828-21621884)
chr7 (231-294)||(17771547-17771610)
[»] chr5 (4 HSPs)
chr5 (231-275)||(35373327-35373371)
chr5 (231-294)||(19840380-19840443)
chr5 (249-281)||(36194631-36194663)
chr5 (231-291)||(39860213-39860273)
[»] chr1 (4 HSPs)
chr1 (262-302)||(10428215-10428255)
chr1 (236-283)||(11462988-11463035)
chr1 (231-294)||(11463918-11463980)
chr1 (231-294)||(52675354-52675417)
[»] chr6 (2 HSPs)
chr6 (231-294)||(7980547-7980610)
chr6 (19-69)||(6040636-6040686)
[»] chr2 (2 HSPs)
chr2 (231-285)||(23914623-23914677)
chr2 (23-69)||(45418342-45418388)
[»] chr8 (1 HSPs)
chr8 (23-67)||(14987958-14988002)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 36195722 - 36196022
Alignment:
Q  1 ggaatatatacttttgaactgaatttttcattatttcagttataccttcaaa-taaatttatttttaaaattctcaaacnnnnnnn-gaaagaatttaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||        |||||||||||||    
T  36195722 ggaatatatacttttgaactgaatttttcattatttcagttatacctttaaaataaatttatttttaaaattctcaaacttttatttgaaagaatttaaa 36195821  T
Q  99 cttcacaaacatatataaaggaaatgcattattttttggcttgaattttcatgattccaagtatactcttacctttaaaaatgtatatttttgatgttat 198  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36195822 cttcacaaacatatataaaggaaatgcattatttttcggcttgaattttcatgattccaagtatactcttacctttaaaaatgtatatttttggtgttat 36195921  T
Q  199 taaaaaaaataagannnnnnnnnnnnnnacgaaagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaacgtt 298  Q
    |||||||| |||||              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||    
T  36195922 taaaaaaagtaaga-tttttttttttttacgaaagaatttttattacatatgttatattgtttgtaacagataaacatattttgttattatttaaatgtt 36196020  T
Q  299 ac 300  Q
    ||    
T  36196021 ac 36196022  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 49492784 - 49492837
Alignment:
Q  249 tgttatattgtttgtaaaagataaacatattttgttactatttaaacgttacaa 302  Q
    ||||||||||||||||||||||||| ||| ||| ||| |||||||| |||||||    
T  49492784 tgttatattgtttgtaaaagataaatatagtttattattatttaaaagttacaa 49492837  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 49492898 - 49492951
Alignment:
Q  249 tgttatattgtttgtaaaagataaacatattttgttactatttaaacgttacaa 302  Q
    ||||||||||||||||||||||||| ||| ||| ||| |||||||| |||||||    
T  49492898 tgttatattgtttgtaaaagataaatatagtttattattatttaaaagttacaa 49492951  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 51613058 - 51613012
Alignment:
Q  23 atttttcattatttcagttataccttcaaataaatttatttttaaaa 69  Q
    |||||||||||||| |||||||| || |||||||||| |||||||||    
T  51613058 atttttcattattttagttatacttttaaataaatttctttttaaaa 51613012  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 25407297 - 25407252
Alignment:
Q  249 tgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    |||||||||||| ||||||||||||||||  ||| |||||||||||    
T  25407297 tgttatattgttggtaaaagataaacataagttgctactatttaaa 25407252  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 23937065 - 23937005
Alignment:
Q  234 aatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    ||||||||||| || |||||||| |||  ||||||||||| ||  ||||||||||||||||    
T  23937065 aatttttattatatttgttatatagttgttaaaagataaatatgatttgttactatttaaa 23937005  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 36637200 - 36637263
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    |||||||||||||| || ||||||||| || |||||||||||||||| |||| || ||||||||    
T  36637200 aagaatttttattatatttgttatattattggtaaaagataaacatagtttgatagtatttaaa 36637263  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 44941065 - 44941107
Alignment:
Q  252 tatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||    
T  44941065 tatattgttggtaaaggataaacatagtttgttactatttaaa 44941107  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 26513120 - 26513075
Alignment:
Q  22 aatttttcattatttcagttataccttcaaataaatttatttttaa 67  Q
    |||||||||||||||||  |||||||| ||| ||||||||||||||    
T  26513120 aatttttcattatttcaactatacctttaaacaaatttatttttaa 26513075  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 42522001 - 42522058
Alignment:
Q  238 tttattacatatgttatattgtttgtaaaag-ataaacatattttgttactatttaaa 294  Q
    ||||||| || |||||||||||| ||||||  ||||||||| ||||||||||||||||    
T  42522001 tttattatatttgttatattgttagtaaaaatataaacatagtttgttactatttaaa 42522058  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 17586966 - 17586938
Alignment:
Q  24 tttttcattatttcagttataccttcaaa 52  Q
    |||||||||||||||||||||||||||||    
T  17586966 tttttcattatttcagttataccttcaaa 17586938  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 21621828 - 21621884
Alignment:
Q  236 tttttattacatatgttatattgtttgtaaaagataaacatattttgttactattta 292  Q
    ||||||||| || ||| ||| |||| |||||||||||||||||||| ||||||||||    
T  21621828 tttttattaaatttgtgataatgttggtaaaagataaacatattttattactattta 21621884  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 17771610 - 17771547
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    |||||||||||||||||  ||||| || || |||||||||||||||| ||| |||||| |||||    
T  17771610 aagaatttttattacattcgttatgttattggtaaaagataaacataatttattactaattaaa 17771547  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 35373327 - 35373371
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaaca 275  Q
    |||||||||||||| || |||||||||||| ||||||||||||||    
T  35373327 aagaatttttattatatttgttatattgttggtaaaagataaaca 35373371  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 19840380 - 19840443
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    |||||||||||||| || | ||||||| ||  ||||||||||||||| | ||||||||||||||    
T  19840380 aagaatttttattatatttattatattattgataaaagataaacataatctgttactatttaaa 19840443  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 36194631 - 36194663
Alignment:
Q  249 tgttatattgtttgtaaaagataaacatatttt 281  Q
    ||||||||||||||||||||||||| |||||||    
T  36194631 tgttatattgtttgtaaaagataaatatatttt 36194663  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 39860273 - 39860213
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactattt 291  Q
    |||||| ||||||| || | ||||||| || |||||||||||| ||| |||||||||||||    
T  39860273 aagaatgtttattatattttttatattattagtaaaagataaaaatagtttgttactattt 39860213  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 10428255 - 10428215
Alignment:
Q  262 gtaaaagataaacatattttgttactatttaaacgttacaa 302  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  10428255 gtaaaagataaacatagtttgttactatttaaaagttacaa 10428215  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 11463035 - 11462988
Alignment:
Q  236 tttttattacatatgttatattgtttgtaaaagataaacatattttgt 283  Q
    ||||||||| || |||||||||||| |||||||||||||||| |||||    
T  11463035 tttttattatatttgttatattgttggtaaaagataaacataatttgt 11462988  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 11463918 - 11463980
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    |||||||||||||| || ||||||||| || ||||||| |||||||| ||| ||||||||||||    
T  11463918 aagaatttttattatatttgttatattattggtaaaagttaaacatagttt-ttactatttaaa 11463980  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 52675354 - 52675417
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    |||||||||||| | || |||||||||||| |||||||| ||||||| ||| || |||||||||    
T  52675354 aagaatttttatcatatttgttatattgttggtaaaagaaaaacatagtttattgctatttaaa 52675417  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 7980547 - 7980610
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgttactatttaaa 294  Q
    |||||||||||||| || |||| |||| || |||||||||||||||| ||| |||||| |||||    
T  7980547 aagaatttttattatatttgttttattattggtaaaagataaacataatttcttactacttaaa 7980610  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6040636 - 6040686
Alignment:
Q  19 ctgaatttttcattatttcagttataccttcaaataaatttatttttaaaa 69  Q
    |||||||||||||||||| ||||||||| | ||| |||||| |||||||||    
T  6040636 ctgaatttttcattatttaagttatacccttaaacaaatttgtttttaaaa 6040686  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 23914623 - 23914677
Alignment:
Q  231 aagaatttttattacatatgttatattgtttgtaaaagataaacatattttgtta 285  Q
    |||||||| ||||| || |||||||||||| || |||||||||| ||||||||||    
T  23914623 aagaatttatattatatttgttatattgttggttaaagataaacctattttgtta 23914677  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 45418388 - 45418342
Alignment:
Q  23 atttttcattatttcagttataccttcaaataaatttatttttaaaa 69  Q
    ||||||||||||| |||||||||| | |||||||||| |||||||||    
T  45418388 atttttcattattccagttatacccttaaataaatttgtttttaaaa 45418342  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 14987958 - 14988002
Alignment:
Q  23 atttttcattatttcagttataccttcaaataaatttatttttaa 67  Q
    |||||||||||||| ||||||||| ||||| ||||||| ||||||    
T  14987958 atttttcattattttagttataccctcaaacaaatttacttttaa 14988002  T

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