View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_42 (Length: 347)
Name: NF5931_high_42
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 330
Target Start/End: Original strand, 34712829 - 34713149
Alignment:
| Q |
10 |
acatcatcaacatgtatatttaaactcacggttcaaaaataaaatacataagagaggtgagactattgaaaacacggcatatggagttataaagaaacaa |
109 |
Q |
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| T |
34712829 |
acatcatcaacatgtatatttaaactcacggttcaaaaataaaatacataagagaggtgagactattgaaaacacaacatatggagttataaagaaacaa |
34712928 |
T |
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| Q |
110 |
tgagcctccacttttattcacaccctcctttttacgtatatactccttctcatttttgaaaccttcttttcaaaatactactcttaacttttgaacaact |
209 |
Q |
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| T |
34712929 |
tgagcctccacttttattcacaccctcctttttacgtatatactccttctcatttttgaaaccttcttttcaaaatactactcttaacttttgaacaact |
34713028 |
T |
|
| Q |
210 |
ctttgctaaaaaatgtaacctgtctactgtaacttgttgtagaagattcttgcagtggagcaatgaggaagtttcgtcctttctactattgccggtgtaa |
309 |
Q |
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| T |
34713029 |
ctttgctaaaaaatgtaacctgtctactgtaacttgttgtagaagattcttgcagtggagcaatgaggaagtttcgtcctttctactattgccggtgtaa |
34713128 |
T |
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| Q |
310 |
acaatataagtctgcattttt |
330 |
Q |
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| T |
34713129 |
acaatataagtctgcattttt |
34713149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 330
Target Start/End: Complemental strand, 49095240 - 49095040
Alignment:
| Q |
121 |
ttttattcacaccctcctttttacgtatatactccttctcatttttgaaaccttcttttcaaaatactactcttaacttttgaacaactctttgctaaaa |
220 |
Q |
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| T |
49095240 |
ttttattcacaccctccttttgacacatatactcctttttattcctaaaatcttgttttcaaaatactactcataactgctaaacaacactttgcaaaaa |
49095141 |
T |
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| Q |
221 |
aatg-taacctgtctactgtaacttgttgtagaagattcttgcagtggagcaatgaggaagtttcgtcctttctactattgccggtgtaaacaatataag |
319 |
Q |
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| T |
49095140 |
aaaggtaacctgcctgtagcaacttgtcgtagaag----------tggagcaatgaagaagtttcatcgtttttactattgccggtgtaaacaatgcaag |
49095051 |
T |
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| Q |
320 |
tctgcattttt |
330 |
Q |
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||| ||||||| |
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| T |
49095050 |
tcttcattttt |
49095040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 124 - 308
Target Start/End: Complemental strand, 7692655 - 7692469
Alignment:
| Q |
124 |
tattcacaccctcctttttacgtatatactccttctcatttttgaaac-cttcttttcaaaatactactcttaacttttgaacaactctttgc-taaaaa |
221 |
Q |
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|||||| |||||||||||| |||||||| ||| | |||| | ||| ||| ||||||||||||||||| |||||||| ||||||||||||| ||||| |
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| T |
7692655 |
tattcataccctcctttttgaatatatacttctttttatttctaaaaatcttgttttcaaaatactactcataacttttaaacaactctttgcaaaaaaa |
7692556 |
T |
|
| Q |
222 |
atgtaacctgtctactgtaacttgttgtagaagattcttgcagtggagcaatgaggaagtttcgtcctttctactattgccggtgta |
308 |
Q |
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| T |
7692555 |
aagtaacctgtttgttgtagcttgccgtagaagatttttgtagtggagtaatgaagaagttttaccgtttttattattgccggtgta |
7692469 |
T |
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