View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_46 (Length: 330)
Name: NF5931_high_46
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_46 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 8416368 - 8416670
Alignment:
| Q |
18 |
atacttggctacgcagtacgcatcggtgcttccacggctattgttcatcttcattggaagaagcttttgtgctcctaagatccctacttcaagcattcct |
117 |
Q |
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| T |
8416368 |
atacttggctacgcagtacgcatcggtgcttccacggctattgttcatcttcattggaagaagcttttgtgctcctaagatccctacttcaagcattcct |
8416467 |
T |
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| Q |
118 |
ataggctgcttccatagctgtctagctgttggtctatgatcacttgcatacaaagttgattcatctaagacatggtaaccaccttcgaggcaaattctca |
217 |
Q |
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| T |
8416468 |
ataggctgcttccatagctgtctagctgttggtctatgatcacttgcatacaaagttgattcatctaagacatggtaaccaccttcgaggcaaattctca |
8416567 |
T |
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| Q |
218 |
tgtgaatcctgcttgaaaatttaacctcgtttcttctatcaccttccatcattccaaaaccgtatttctcaagattgaaccatcgagaatgaaccggcct |
317 |
Q |
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| T |
8416568 |
tgtgaatcctgcttgaaaatttaacctcgtttcttctatcaccttccatcattccaaaaccgtatttctcaagattgaaccatcgagaatgaaccggcct |
8416667 |
T |
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| Q |
318 |
atg |
320 |
Q |
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| T |
8416668 |
atg |
8416670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 61 - 314
Target Start/End: Original strand, 7915958 - 7916211
Alignment:
| Q |
61 |
ttcatcttcattggaagaagcttttgtgctcctaagatccctacttcaagcattcctataggctgcttccatagctgtctagctgttggtctatgatcac |
160 |
Q |
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| T |
7915958 |
ttcatcttcatagggagaagcccttttgctcctaagatgcccatctcaagtattccaataggctgcttccatagctgtcttgctgttggtctttgatcac |
7916057 |
T |
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| Q |
161 |
ttgcatacaaagttgattcatctaagacatggtaaccaccttcgaggcaaattctcatgtgaatcctgcttgaaaatttaacctcgtttcttctatcacc |
260 |
Q |
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| T |
7916058 |
taatgtacaaagtggattcatctaaaacatggtatccaccttcaaggcaaactctaagatgaatcctacttgaaaatttctgctcatttcttctatcacc |
7916157 |
T |
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| Q |
261 |
ttccatcattccaaaaccgtatttctcaagattgaaccatcgagaatgaaccgg |
314 |
Q |
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| T |
7916158 |
ttcaagtgcaccaaaaccaaatttctcaaggctaaaccaacgagaatgaaccgg |
7916211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 13913 - 13983
Alignment:
| Q |
171 |
agttgattcatctaagacatggtaaccaccttcgaggcaaattctcatgtgaatcctgcttgaaaatttaa |
241 |
Q |
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| T |
13913 |
agttgattcatccaaaacatgataaccaccttctagacaaaccctcatgtgaatcctacttgcaaatttaa |
13983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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