View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_high_48 (Length: 318)

Name: NF5931_high_48
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_high_48
NF5931_high_48
[»] chr3 (1 HSPs)
chr3 (1-296)||(4815487-4815782)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 4815782 - 4815487
Alignment:
Q  1 gataaaagtgcaaagaataacaaaagtgtttcctaaggtagtttagaagttaagttcatcaaaagctgctaaactacattgagtcgagtctttattgtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815782 gataaaagtgcaaagaataacaaaagtgtttcctaaggtagtttagaagttaagttcatcaaaagctgctaaactacattgagtcgagtctttattgtag 4815683  T
Q  101 cttgtttttctgatttaccttgaagtcgattgtgcatttgaagtcgaatagcatgctaagaatccaattgagttcataaatcatctaggaacttatgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815682 cttgtttttctgatttaccttgaagtcgattgtgcatttgaagtcgaatagcatgctaagaatccaattgagttcataaatcatctaggaacttatgaaa 4815583  T
Q  201 ttcaacaacatacacaaagtcttgtagtataggatcagatagaacgatatgaagttcaaagagatctagcttcagatgaaagaatggagtgttaga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815582 ttcaacaacatacacaaagtcttgtagtataggatcagatagaacgatatgaagttcaaagagatctagcttcagatgaaagaatggagtgttaga 4815487  T

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