View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_high_5 (Length: 650)
Name: NF5931_high_5
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 24224677 - 24225284
Alignment:
| Q |
1 |
tgttagtcactttgttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||| |
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|
| T |
24224677 |
tgttagtcactttgttattttatcttattatctatattgttaacatggtattcaaagcatgatctaatcctcattgaattgtttatcgctttcgctattg |
24224776 |
T |
|
| Q |
101 |
agttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttgttcggnnnnnnnntttatgattgaagaaaaagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
24224777 |
agttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttattcggaaaaaaaatttatgattgaagaaaaagcat |
24224876 |
T |
|
| Q |
201 |
ggttccttccgtcaattgcttggtagaaacaaattagagaaactgggaacgtgatgtttgcttcgaaatggtaatttgcaacattccactaattggtatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24224877 |
ggttccttccgtcaattgcttggtagaaacaaattagagaaattgggaacatgatgtttgcttcgaaatggtaatttgcaacattccactaattggtatt |
24224976 |
T |
|
| Q |
301 |
atttctttggatttttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaattaattgcatcaatcatcaatattttggattttag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24224977 |
atttctttggatttttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaattaattgcatcaatcatcaatattttggattttag |
24225076 |
T |
|
| Q |
401 |
agacgtagaagttattctttcaccgtggtatttacttg-----tttctttgatgcttgtcgtcattggttaatgtttgttcggtttgctccggttgttgg |
495 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
24225077 |
agacgtagaagttattctttcaccatggtatttacttgtttaatttctttgatgcttgtcgtcattggttaatgtttgttcggtctgctccggttgttgg |
24225176 |
T |
|
| Q |
496 |
ttgatatgtatagttttgtcatgttttgggatgtgtatgggtgttcttttcgtttgagtttttgtctttggatcgctcttgttcttggtttatttgtttg |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24225177 |
ttgatatgtatagttttgtcatgttttgggatgtgtatgggtgttctttttgtttgagtttttgtctttggatcgctcttgttcttggtttatttgtttg |
24225276 |
T |
|
| Q |
596 |
aggatgca |
603 |
Q |
| |
|
|||||||| |
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|
| T |
24225277 |
aggatgca |
24225284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 17927870 - 17927761
Alignment:
| Q |
38 |
tgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatt |
137 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||| || || |||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
17927870 |
tgttaacatggtatacagagcatggtttgatcgtctttaaattgtttgtagcttccgctattgagttttcaaaagttt-gggaatgttgtgtgattgatt |
17927772 |
T |
|
| Q |
138 |
tggtttaattt |
148 |
Q |
| |
|
||||||||||| |
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|
| T |
17927771 |
tggtttaattt |
17927761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 10740746 - 10740855
Alignment:
| Q |
37 |
ttgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgat |
136 |
Q |
| |
|
|||||||||||||||| | |||||| ||| |||||| |||||| | | | |||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
10740746 |
ttgttaacatggtatcaagagcatggtttgatcctccttgaatgatctgtcgcttccgcagttgagttcccaaaagtttg-ggaatgttgtgtgattgat |
10740844 |
T |
|
| Q |
137 |
ttggtttaatt |
147 |
Q |
| |
|
||||||||||| |
|
|
| T |
10740845 |
ttggtttaatt |
10740855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 13166651 - 13166727
Alignment:
| Q |
88 |
gcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttg |
165 |
Q |
| |
|
||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||||||||||| || |||||||| |||| |
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|
| T |
13166651 |
gcttccgcttttgtgttcccaaaaatttg-ggaattttgtgtgattgatttggtttaatttatagtgttggtcttttg |
13166727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 9401768 - 9401883
Alignment:
| Q |
35 |
tattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattg |
134 |
Q |
| |
|
|||||||||||||||||| | | | || | | |||||| ||||| | ||| | |||||| | |||||||||||||| ||| ||||| ||||||||||| |
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|
| T |
9401768 |
tattgttaacatggtatcgagaacttgttctgatcctccttgaactatttgtctcttccgttgttgagttcccaaaaatttg-ggaatattgtgtgattg |
9401866 |
T |
|
| Q |
135 |
atttggtttaattttta |
151 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
9401867 |
atttggtttgattttta |
9401883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 3950609 - 3950652
Alignment:
| Q |
27 |
attatctatattgttaacatggtatccaaagcatgatttaatcc |
70 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
3950609 |
attatctatattgttaacatggtatcgaaagcatggtttgatcc |
3950652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 24725780 - 24725881
Alignment:
| Q |
10 |
ctttgttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaa |
109 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||||||| |||| | ||| | |||| ||| || |||||| ||||| ||||| ||||||| ||||||| |
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|
| T |
24725780 |
ctttattattctatctgattatctatgttgttaacatgatatcaagagcctaatttgatcgtccttgaatcatttataacttcctctattgaattcccaa |
24725879 |
T |
|
| Q |
110 |
aa |
111 |
Q |
| |
|
|| |
|
|
| T |
24725880 |
aa |
24725881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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