View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_50 (Length: 312)
Name: NF5931_high_50
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_50 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 46454449 - 46454145
Alignment:
| Q |
8 |
agataattctcaaaaacattacatcaaggtagtccacaaaattattgttgagagcgactgaaactggaaatggaagcaataaagcatcagtttccatacc |
107 |
Q |
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| T |
46454449 |
agataattctcaaaaacattacatcaaggtagtccacaaaattattgttgagagcgactgaaactgtaaatggaagcaataaagcatcagtttccatacc |
46454350 |
T |
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| Q |
108 |
ttatgaggaatcataaaaccactgaaaaggttccacaacatataacatggagcaccgatgatggcagcaacatgatgatttggtgtgacagcagtagtca |
207 |
Q |
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| T |
46454349 |
ttatgaggaatcataaaaccactgaaaaggttccacaacatataacatggagcaccgatgatggcagcaacatgatgatttggtgtgacagcagtagtca |
46454250 |
T |
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| Q |
208 |
tcatcccataaaaggtaaaatataacatagtcaaatacatgaagaataagtaccaaatgaacctatcaacagtccagacaaatgaacccatggaatagaa |
307 |
Q |
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| T |
46454249 |
tcatcccataaaaggtaaaatataacatagtcaaatacatgaagaataagtaccaaatgaacctatcaacagtccagacaaatgaacccatggaatagaa |
46454150 |
T |
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| Q |
308 |
tattg |
312 |
Q |
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||||| |
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| T |
46454149 |
tattg |
46454145 |
T |
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